RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 CRMP1Q14194 572 aa18.8■□□□□ 0.6
TMEM260-203ENST00000539559 KRT33BQ14525 404 aa18.8■□□□□ 0.6
TMEM260-203ENST00000539559 ZIC1Q15915 447 aa18.8■□□□□ 0.6
TMEM260-203ENST00000539559 KANSL1Q7Z3B3 1105 aa18.8■□□□□ 0.6
TMEM260-203ENST00000539559 BPHLQ86WA6 291 aaPredicted RBP18.8■□□□□ 0.6
TMEM260-203ENST00000539559 GJD3Q8N144 294 aa18.8■□□□□ 0.6
TMEM260-203ENST00000539559 CDK2AP1O14519 115 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 OR5F1O95221 314 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 MAGEB1P43366 347 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 BDH1Q02338 343 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 SNTB2Q13425 540 aaKnown RBP18.79■□□□□ 0.6
TMEM260-203ENST00000539559 AANATQ16613 207 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 DUSP5Q16690 384 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 HNRNPA1L2Q32P51 320 aaKnown RBP18.79■□□□□ 0.6
TMEM260-203ENST00000539559 TJAP1Q5JTD0 557 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 Q6ZTK2 550 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 KCTD12Q96CX2 325 aaKnown RBP18.79■□□□□ 0.6
TMEM260-203ENST00000539559 WDR89Q96FK6 387 aaPredicted RBP18.79■□□□□ 0.6
TMEM260-203ENST00000539559 HS6ST2Q96MM7 605 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 CLEC4MQ9H2X3 399 aaPredicted RBP18.79■□□□□ 0.6
TMEM260-203ENST00000539559 CLDND1Q9NY35 253 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 ZNF780BQ9Y6R6 833 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 TRABD2BA6NFA1 517 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 G3V3Q6 166 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 PEX12O00623 359 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 PTHLHP12272 177 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 GALP22466 123 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 SERPINA12Q8IW75 414 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 FTMTQ8N4E7 242 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 SMPDL3BQ92485 455 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 NXPE2Q96DL1 559 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 RSPRY1Q96DX4 576 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 ANKRD19PQ9H560 264 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 TMEM74BQ9NUR3 256 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 SCML1Q9UN30 329 aa18.79■□□□□ 0.6
TMEM260-203ENST00000539559 SBK2P0C263 348 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 SULT1A3P0DMM9 295 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 SULT1A4P0DMN0 295 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 ERVK-21P61565 698 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 PUDPQ08623 228 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 SUZ12Q15022 739 aaKnown RBP18.78■□□□□ 0.6
TMEM260-203ENST00000539559 COL28A1Q2UY09 1125 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 OR2L5Q8NG80 312 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 GRHL3Q8TE85 626 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 ADAMTS14Q8WXS8 1223 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 DERL3Q96Q80 235 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 JAM3Q9BX67 310 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 ADGRL4Q9HBW9 690 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 TP53BP1Q12888 1972 aaPredicted RBP18.78■□□□□ 0.6
TMEM260-203ENST00000539559 MEIKINA0A087WXM9 373 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 PCDH8O95206 1070 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 PPP1R3DO95685 299 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 ASGR2P07307 311 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 RAB28P51157 221 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 SIM1P81133 766 aaPredicted RBP18.78■□□□□ 0.6
TMEM260-203ENST00000539559 ZNF234Q14588 700 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 FAM109BQ6ICB4 259 aaPredicted RBP18.78■□□□□ 0.6
TMEM260-203ENST00000539559 MFSD12Q6NUT3 480 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 FAAP20Q6NZ36 180 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 NLRC3Q7RTR2 1065 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 CDH24Q86UP0 819 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 OR10A4Q9H209 315 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 KCMF1Q9P0J7 381 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 ZNF223Q9UK11 482 aaPredicted RBP18.78■□□□□ 0.6
TMEM260-203ENST00000539559 AUP1Q9Y679 476 aa18.78■□□□□ 0.6
TMEM260-203ENST00000539559 HSF2Q03933 536 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 TMEM35AQ53FP2 167 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 FAAH2Q6GMR7 532 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 RTL4Q6ZR62 310 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 PXKQ7Z7A4 578 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 SLC44A3Q8N4M1 653 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 C12orf76Q8N812 135 aaPredicted RBP18.77■□□□□ 0.6
TMEM260-203ENST00000539559 RPLP0P6Q8NHW5 317 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 BRIX1Q8TDN6 353 aaKnown RBP18.77■□□□□ 0.6
TMEM260-203ENST00000539559 TMEM239Q8WW34 195 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 ZMYND19Q96E35 227 aaPredicted RBP18.77■□□□□ 0.6
TMEM260-203ENST00000539559 DDOQ99489 341 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 C1QTNF7Q9BXJ2 289 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 CAPN10Q9HC96 672 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 ATG2BQ96BY7 2078 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 HSD17B2P37059 387 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 GDNFP39905 211 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 WASP42768 502 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 SHC2P98077 582 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 GRK1Q15835 563 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 PRAMEF8Q5VWM4 474 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 PRAMEF7Q5VXH5 474 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 TMEFF1Q8IYR6 380 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 LSMEM1Q8N8F7 131 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 GALNT11Q8NCW6 608 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 OR52E1Q8NGJ3 308 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 LGALS14Q8TCE9 139 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 OR14A2Q96R54 314 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 MRPL39Q9NYK5 338 aaKnown RBP18.77■□□□□ 0.6
TMEM260-203ENST00000539559 CALML5Q9NZT1 146 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 UBQLN2Q9UHD9 624 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 RCE1Q9Y256 329 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 SPTBP11277 2137 aa18.77■□□□□ 0.6
TMEM260-203ENST00000539559 TEX46H3BTG2 121 aa18.77■□□□□ 0.59
TMEM260-203ENST00000539559 SC5DO75845 299 aa18.77■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms