RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	MALSU1	Q96EH3	234 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	SIPA1	Q96FS4	1042 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	PRMT6	Q96LA8	375 aa	Predicted RBP	5.17	□□□□□ -1.58
CD44-231	ENST00000531110	COL21A1	Q96P44	957 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	KCNA7	Q96RP8	456 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	TEX12	Q9BXU0	123 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	NKX6-2	Q9C056	277 aa	Predicted RBP	5.17	□□□□□ -1.58
CD44-231	ENST00000531110	COMMD4	Q9H0A8	199 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	PLEKHA2	Q9HB19	425 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110		Q9N2J8	555 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	KRCC1	Q9NPI7	259 aa	Predicted RBP	5.17	□□□□□ -1.58
CD44-231	ENST00000531110	DUS2	Q9NX74	493 aa	Known RBP	5.17	□□□□□ -1.58
CD44-231	ENST00000531110	ARL15	Q9NXU5	204 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	TBC1D29	Q9UFV1	150 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	CAMK2A	Q9UQM7	478 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	STARD10	Q9Y365	291 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	ATG4B	Q9Y4P1	393 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	HSPB11	Q9Y547	144 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	AKAP11	Q9UKA4	1901 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	DICER1	Q9UPY3	1922 aa	Known RBP	5.17	□□□□□ -1.58
CD44-231	ENST00000531110	ZCCHC11	Q5TAX3	1644 aa	Known RBP	5.16	□□□□□ -1.58
CD44-231	ENST00000531110	MAP3K4	Q9Y6R4	1608 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110		A0A0U1RQK1	487 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	TRBC2	A0A5B9	178 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF320	A2RRD8	509 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	IMPA2	O14732	288 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	CDIPT	O14735	213 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	MRAS	O14807	208 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	UBD	O15205	165 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	CFLAR	O15519	480 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	GADD45G	O95257	159 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	GH1	P01241	217 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	KLKB1	P03952	638 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	OR56A5	P0C7T3	313 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	CYP4B1	P13584	511 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	PVALB	P20472	110 aa	Predicted RBP	5.16	□□□□□ -1.58
CD44-231	ENST00000531110	MSR1	P21757	451 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	BCKDHB	P21953	392 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	STOM	P27105	288 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	GCLM	P48507	274 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	NRIP1	P48552	1158 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF41	P51814	821 aa	Predicted RBP	5.16	□□□□□ -1.58
CD44-231	ENST00000531110	KPNA2	P52292	529 aa	Known RBP	5.16	□□□□□ -1.58
CD44-231	ENST00000531110	MVD	P53602	400 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	PLA2G16	P53816	162 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	IRF8	Q02556	426 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	SLC17A1	Q14916	467 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	QPRT	Q15274	297 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	TAF1A	Q15573	450 aa	Predicted RBP	5.16	□□□□□ -1.58
CD44-231	ENST00000531110	MPPED2	Q15777	294 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	TATDN3	Q17R31	274 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	LRRC26	Q2I0M4	334 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	C14orf28	Q4W4Y0	310 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	ALG10	Q5BKT4	473 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	ALG10B	Q5I7T1	473 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	TTC23	Q5W5X9	447 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	ACSM5	Q6NUN0	579 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	DENND1B	Q6P3S1	775 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	TCF24	Q7RTU0	167 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	IRF2BP2	Q7Z5L9	587 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	CCDC190	Q86UF4	302 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	LRRC28	Q86X40	367 aa	Predicted RBP	5.16	□□□□□ -1.58
CD44-231	ENST00000531110	COMMD1	Q8N668	190 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	ACBD7	Q8N6N7	88 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	YIPF7	Q8N8F6	280 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	NRAC	Q8N912	160 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	NECAB1	Q8N987	351 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110		Q8N9P0	234 aa	Predicted RBP	5.16	□□□□□ -1.58
CD44-231	ENST00000531110	ANKRD52	Q8NB46	1076 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110		Q8NFD4	153 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	OR9A2	Q8NGT5	310 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	CSGALNACT1	Q8TDX6	532 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	KCNE4	Q8WWG9	221 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	OIT3	Q8WWZ8	545 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	ASB13	Q8WXK3	278 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	FCGR1B	Q92637	280 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	RIT1	Q92963	219 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	EXT2	Q93063	718 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	POP5	Q969H6	163 aa	Known RBP	5.16	□□□□□ -1.58
CD44-231	ENST00000531110	SMIM12	Q96EX1	92 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	MED8	Q96G25	268 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	LINC00052	Q96N35	136 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	WDFY2	Q96P53	400 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF300	Q96RE9	604 aa	Predicted RBP	5.16	□□□□□ -1.58
CD44-231	ENST00000531110	CSF3R	Q99062	836 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	IL12RB2	Q99665	862 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	WDR77	Q9BQA1	342 aa	Predicted RBP	5.16	□□□□□ -1.58
CD44-231	ENST00000531110	MGME1	Q9BQP7	344 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	DPH7	Q9BTV6	452 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	FUNDC2	Q9BWH2	189 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	RAB33B	Q9H082	229 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	CSTL1	Q9H114	145 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	ING2	Q9H160	280 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	ELOVL6	Q9H5J4	265 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	TUBA4B	Q9H853	241 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	RNF121	Q9H920	327 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	TPT1P8	Q9HAU6	139 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	POPDC2	Q9HBU9	364 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	ZDHHC4	Q9NPG8	344 aa		5.16	□□□□□ -1.58
CD44-231	ENST00000531110	IL1RAP	Q9NPH3	570 aa		5.16	□□□□□ -1.58

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