RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	GABRA1	P14867	456 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	POU3F2	P20265	443 aa	Predicted RBP	18.74	■□□□□ 0.59
CD44-222	ENST00000526025	FKBP2	P26885	142 aa	Known RBP	18.74	■□□□□ 0.59
CD44-222	ENST00000526025	RYK	P34925	604 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	APOBEC1	P41238	236 aa	Known RBP	18.74	■□□□□ 0.59
CD44-222	ENST00000526025	UQCRFS1	P47985	274 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	IDH2	P48735	452 aa	Known RBP	18.74	■□□□□ 0.59
CD44-222	ENST00000526025	ZNF136	P52737	540 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	CLDN18	P56856	261 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	COPZ1	P61923	177 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	RAC1	P63000	192 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	BNIP2	Q12982	314 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	SELENBP1	Q13228	472 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	GXYLT1	Q4G148	440 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	GLIPR1L2	Q4G1C9	344 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	LRRC23	Q53EV4	343 aa	Predicted RBP	18.74	■□□□□ 0.59
CD44-222	ENST00000526025	CYBRD1	Q53TN4	286 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	DCST1	Q5T197	706 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	WBP2NL	Q6ICG8	309 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	PLEKHM3	Q6ZWE6	761 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	COMTD1	Q86VU5	262 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	LSMEM1	Q8N8F7	131 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	OR52E4	Q8NGH9	312 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	FIG4	Q92562	907 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	ZNF524	Q96C55	264 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	18.74	■□□□□ 0.59
CD44-222	ENST00000526025	WDYHV1	Q96HA8	205 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	ADAM19	Q9H013	955 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	TP63	Q9H3D4	680 aa	Predicted RBP	18.74	■□□□□ 0.59
CD44-222	ENST00000526025	MUC13	Q9H3R2	512 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	ADPRHL2	Q9NX46	363 aa		18.74	■□□□□ 0.59
CD44-222	ENST00000526025	AHRR	A9YTQ3	701 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	TPO	P07202	933 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	ME2	P23368	584 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	RGS8	P57771	180 aa	Predicted RBP	18.73	■□□□□ 0.59
CD44-222	ENST00000526025	SELENOW	P63302	87 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	CEACAM7	Q14002	265 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	EMC4	Q5J8M3	183 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	CBLL1	Q75N03	491 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	CD163	Q86VB7	1156 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	RANBP3L	Q86VV4	465 aa	Predicted RBP	18.73	■□□□□ 0.59
CD44-222	ENST00000526025	DOLPP1	Q86YN1	238 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	RNF148	Q8N7C7	305 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	SLC25A43	Q8WUT9	341 aa	Predicted RBP	18.73	■□□□□ 0.59
CD44-222	ENST00000526025	LZIC	Q8WZA0	190 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	PROX1	Q92786	737 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	RELT	Q969Z4	430 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	ZNF559	Q9BR84	538 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	BTBD10	Q9BSF8	475 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	TRIM2	Q9C040	744 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	OSGIN2	Q9Y236	505 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	SLC9A8	Q9Y2E8	581 aa		18.73	■□□□□ 0.59
CD44-222	ENST00000526025	HELZ2	Q9BYK8	2649 aa	Known RBP	18.73	■□□□□ 0.59
CD44-222	ENST00000526025	MPDZ	O75970	2070 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025		A0A1B0GUH1	482 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	GJE1	A6NN92	205 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	TMEM229A	B2RXF0	380 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	SHISA8	B8ZZ34	492 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	GYG2	O15488	501 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	WISP1	O95388	367 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	PRG2	P13727	222 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	TCEA1	P23193	301 aa	Known RBP	18.72	■□□□□ 0.59
CD44-222	ENST00000526025	MERTK	Q12866	999 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	C3AR1	Q16581	482 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	GLYAT	Q6IB77	296 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	C3orf33	Q6P1S2	294 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	MEIOB	Q8N635	442 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	OR5M1	Q8NGP8	315 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	ZPLD1	Q8TCW7	415 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	FAM162A	Q96A26	154 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	NPAS1	Q99742	590 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	PCDHAC1	Q9H158	963 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	C12orf10	Q9HB07	376 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	SERINC1	Q9NRX5	453 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	PNPLA3	Q9NST1	481 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	RPS6KA6	Q9UK32	745 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	SNX13	Q9Y5W8	968 aa		18.72	■□□□□ 0.59
CD44-222	ENST00000526025	SPIN1	Q9Y657	262 aa	Predicted RBP	18.72	■□□□□ 0.59
CD44-222	ENST00000526025	MYO7B	Q6PIF6	2116 aa		18.71	■□□□□ 0.59
CD44-222	ENST00000526025		H3BML4	177 aa		18.71	■□□□□ 0.59
CD44-222	ENST00000526025	FRS3	O43559	492 aa		18.71	■□□□□ 0.59
CD44-222	ENST00000526025	POLR2H	P52434	150 aa	Known RBP	18.71	■□□□□ 0.59
CD44-222	ENST00000526025	NCALD	P61601	193 aa		18.71	■□□□□ 0.59
CD44-222	ENST00000526025	ULK2	Q8IYT8	1036 aa		18.71	■□□□□ 0.59
CD44-222	ENST00000526025	UCN2	Q96RP3	112 aa		18.71	■□□□□ 0.59
CD44-222	ENST00000526025	POLR2J2	Q9GZM3	115 aa	Known RBP	18.71	■□□□□ 0.59
CD44-222	ENST00000526025	POLR2J3	Q9H1A7	115 aa	Known RBP	18.71	■□□□□ 0.59
CD44-222	ENST00000526025	PAQR5	Q9NXK6	330 aa	Predicted RBP	18.71	■□□□□ 0.59
CD44-222	ENST00000526025	TNFRSF10D	Q9UBN6	386 aa		18.71	■□□□□ 0.59
CD44-222	ENST00000526025	EGFL7	Q9UHF1	273 aa		18.71	■□□□□ 0.59
CD44-222	ENST00000526025	PACSIN3	Q9UKS6	424 aa		18.71	■□□□□ 0.59
CD44-222	ENST00000526025	KIAA1549	Q9HCM3	1950 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025		E9PLN8	166 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	ADAMDEC1	O15204	470 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	EFNA2	O43921	213 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	TCN1	P20061	433 aa	Predicted RBP	18.7	■□□□□ 0.58
CD44-222	ENST00000526025	ACVR2A	P27037	513 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	STAR	P49675	285 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	CLK1	P49759	484 aa	Known RBP	18.7	■□□□□ 0.58
CD44-222	ENST00000526025	EIF2S3L	Q2VIR3	472 aa	Known RBP	18.7	■□□□□ 0.58

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