RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 ATF7IP2Q5U623 682 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 SEL1L3Q68CR1 1132 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 EMBQ6PCB8 327 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 C6orf89Q6UWU4 347 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 CYS1Q717R9 158 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 FAM228AQ86W67 206 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 TMEM17Q86X19 198 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 ANKFN1Q8N957 763 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 OR8K1Q8NGG5 319 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 MIPOL1Q8TD10 442 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 TBCKQ8TEA7 893 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 RPL3LQ92901 407 aaKnown RBP5.99□□□□□ -1.45
LSM1-202ENST00000520286 LINC00479Q96M42 142 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 ZNF396Q96N95 335 aaPredicted RBP5.99□□□□□ -1.45
LSM1-202ENST00000520286 AGAP3Q96P47 875 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 PANX2Q96RD6 677 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 OMDQ99983 421 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 SLC30A2Q9BRI3 323 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 FEM1AQ9BSK4 669 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 CAPS2Q9BXY5 557 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 POLR3FQ9H1D9 316 aaPredicted RBP5.99□□□□□ -1.45
LSM1-202ENST00000520286 JPT2Q9H910 190 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 TXLNGQ9NUQ3 528 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 CTSZQ9UBR2 303 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 WDR45Q9Y484 360 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 ASB3Q9Y575 518 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 SPACA6W5XKT8 324 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 ECM29Q5VYK3 1845 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 COL5A3P25940 1745 aaPredicted RBP5.99□□□□□ -1.45
LSM1-202ENST00000520286 TIAM2Q8IVF5 1701 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 MAP3K15Q6ZN16 1313 aa5.99□□□□□ -1.45
LSM1-202ENST00000520286 A0A087WWV3 80 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 CTAGE15A4D2H0 777 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 FOXI3A8MTJ6 420 aaPredicted RBP5.98□□□□□ -1.45
LSM1-202ENST00000520286 GOLGA8KD6RF30 607 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 LIN7AO14910 233 aaPredicted RBP5.98□□□□□ -1.45
LSM1-202ENST00000520286 NUDT21O43809 227 aaKnown RBP5.98□□□□□ -1.45
LSM1-202ENST00000520286 GPRIN2O60269 458 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 SNNO75324 88 aaPredicted RBP5.98□□□□□ -1.45
LSM1-202ENST00000520286 YEATS4O95619 227 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 SEMA4FO95754 770 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 IGF1P05019 195 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 TOP1P11387 765 aaKnown RBP5.98□□□□□ -1.45
LSM1-202ENST00000520286 PBLDP30039 288 aaPredicted RBP5.98□□□□□ -1.45
LSM1-202ENST00000520286 PLA2G16P53816 162 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 NTHL1P78549 312 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 MYL5Q02045 173 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 FILIP1LQ4L180 1135 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 C14orf28Q4W4Y0 310 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 MS4A13Q5J8X5 152 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 CEP85LQ5SZL2 805 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 RFWD3Q6PCD5 774 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 ZNF613Q6PF04 617 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 HSD11B1LQ7Z5J1 315 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 CEACAM19Q7Z692 300 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 KIAA1328Q86T90 577 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 CTAGE6Q86UF2 777 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 ARL14Q8N4G2 192 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 FLVCR1-AS1Q8TAF5 88 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 FNDC8Q8TC99 324 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 CRYGNQ8WXF5 182 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 TMEM121Q9BTD3 319 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 SLC40A1Q9NP59 571 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 MRPL39Q9NYK5 338 aaKnown RBP5.98□□□□□ -1.45
LSM1-202ENST00000520286 RCOR3Q9P2K3 495 aaPredicted RBP5.98□□□□□ -1.45
LSM1-202ENST00000520286 GALPQ9UBC7 116 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 ANAPC7Q9UJX3 599 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 FER1L6Q2WGJ9 1857 aa5.98□□□□□ -1.45
LSM1-202ENST00000520286 RFX7Q2KHR2 1363 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 TRABD2BA6NFA1 517 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 RPL37AP8A6NKH3 93 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 HIP1O00291 1037 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 B3GAT3O94766 335 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 IGHG3P01860 377 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 SNRPCP09234 159 aaKnown RBP5.97□□□□□ -1.45
LSM1-202ENST00000520286 RPS2P15880 293 aaKnown RBP5.97□□□□□ -1.45
LSM1-202ENST00000520286 DHPSP49366 369 aaPredicted RBP5.97□□□□□ -1.45
LSM1-202ENST00000520286 ARHGDIAP52565 204 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 GNGT1P63211 74 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 PLOD1Q02809 727 aaPredicted RBP5.97□□□□□ -1.45
LSM1-202ENST00000520286 IFFO1Q0D2I5 559 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 ELAVL2Q12926 359 aaKnown RBP5.97□□□□□ -1.45
LSM1-202ENST00000520286 PDK3Q15120 406 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 SNCBQ16143 134 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 SYPL1Q16563 259 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 C9orf66Q5T8R8 295 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 ZNF683Q8IZ20 524 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 LRRC43Q8N309 656 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 DRAXINQ8NBI3 349 aaPredicted RBP5.97□□□□□ -1.45
LSM1-202ENST00000520286 RFESDQ8TAC1 157 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 AENQ8WTP8 325 aaKnown RBP5.97□□□□□ -1.45
LSM1-202ENST00000520286 NAPGQ99747 312 aaPredicted RBP5.97□□□□□ -1.45
LSM1-202ENST00000520286 GNG12Q9UBI6 72 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 CYTH4Q9UIA0 394 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 BARX2Q9UMQ3 279 aaPredicted RBP5.97□□□□□ -1.45
LSM1-202ENST00000520286 CLEC4AQ9UMR7 237 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 SLX4Q8IY92 1834 aa5.97□□□□□ -1.45
LSM1-202ENST00000520286 MYO5AQ9Y4I1 1855 aaKnown RBP5.96□□□□□ -1.45
LSM1-202ENST00000520286 COL4A5P29400 1685 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 IGHV3-16A0A0C4DH30 117 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms