RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 ST8SIA1Q92185 356 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 ABTB1Q969K4 478 aaPredicted RBP13.55□□□□□ -0.24
NUP54-213ENST00000513352 SLC35B4Q969S0 331 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 RELTQ969Z4 430 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 MCHR1Q99705 422 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 NPAS1Q99742 590 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 WFDC6Q9BQY6 131 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 EVA1AQ9H8M9 152 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 CTPS2Q9NRF8 586 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 ACER3Q9NUN7 267 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 DCAF13Q9NV06 445 aaKnown RBP13.55□□□□□ -0.24
NUP54-213ENST00000513352 SELENONQ9NZV5 590 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 TNFRSF10DQ9UBN6 386 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 ACAD8Q9UKU7 415 aa13.55□□□□□ -0.24
NUP54-213ENST00000513352 MRPS18CQ9Y3D5 142 aaKnown RBP13.55□□□□□ -0.24
NUP54-213ENST00000513352 GTF3C1Q12789 2109 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 ERICH4A6NGS2 130 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 CPSF4LA6NMK7 179 aaKnown RBP13.54□□□□□ -0.24
NUP54-213ENST00000513352 NPIPA2E9PIF3 369 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 NPIPA3F8WFD2 350 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 PRKD3O94806 890 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 IFNW1P05000 195 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 PEPDP12955 493 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 EDN3P14138 238 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 ZNF17P17021 662 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 CCNA2P20248 432 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 ZNF136P52737 540 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 C19orf57Q0VDD7 668 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 TRAP1Q12931 704 aaKnown RBP13.54□□□□□ -0.24
NUP54-213ENST00000513352 GLYR1Q49A26 553 aaPredicted RBP13.54□□□□□ -0.24
NUP54-213ENST00000513352 WBP2NLQ6ICG8 309 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 LCN8Q6JVE9 175 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 PGM2L1Q6PCE3 622 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 RBM45Q8IUH3 476 aaKnown RBP13.54□□□□□ -0.24
NUP54-213ENST00000513352 GTPBP8Q8N3Z3 284 aaPredicted RBP13.54□□□□□ -0.24
NUP54-213ENST00000513352 FAM86B1Q8N7N1 296 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 OR4D11Q8NGI4 311 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 ZNF524Q96C55 264 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 MRGPRX4Q96LA9 322 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 PRR14Q9BWN1 585 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 MMADHCQ9H3L0 296 aaPredicted RBP13.54□□□□□ -0.24
NUP54-213ENST00000513352 TMEM185BQ9H7F4 350 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 TMEM27Q9HBJ8 222 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 SPRR3Q9UBC9 169 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 SLC7A8Q9UHI5 535 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 KALRNO60229 2985 aa13.54□□□□□ -0.24
NUP54-213ENST00000513352 FAAHO00519 579 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 AQP7O14520 342 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 SEC14L5O43304 696 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 OPN1LWP04000 364 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 BMP7P18075 431 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 CHMP24386 653 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 HTR2AP28223 471 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 PTGS2P35354 604 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 SLC1A3P43003 542 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 STARP49675 285 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 ERFP50548 548 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 POLR2HP52434 150 aaKnown RBP13.53□□□□□ -0.24
NUP54-213ENST00000513352 B3GALT5-AS1P59052 145 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 SRYQ05066 204 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 FOXD4Q12950 439 aaPredicted RBP13.53□□□□□ -0.24
NUP54-213ENST00000513352 OR1Q1Q15612 314 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 NPTX1Q15818 432 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 C3AR1Q16581 482 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.53□□□□□ -0.24
NUP54-213ENST00000513352 MTX3Q5HYI7 312 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 C1orf146Q5VVC0 180 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 GRINAQ7Z429 371 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 SPATA24Q86W54 205 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 UBQLNLQ8IYU4 475 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 OR5M9Q8NGP3 310 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 POC1BQ8TC44 478 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 SARAFQ96BY9 339 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 SLC47A1Q96FL8 570 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 PYURFQ96I23 114 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 SEPHS2Q99611 448 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 BARD1Q99728 777 aaKnown RBP13.53□□□□□ -0.24
NUP54-213ENST00000513352 UGT2B28Q9BY64 529 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 TRIM2Q9C040 744 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 SERINC1Q9NRX5 453 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 PLSCR2Q9NRY7 297 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 STOML1Q9UBI4 398 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 CAMK2AQ9UQM7 478 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 POMPQ9Y244 141 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 ZNF337Q9Y3M9 751 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 CHD6Q8TD26 2715 aa13.53□□□□□ -0.24
NUP54-213ENST00000513352 TMED7-TICAM2A0A0A6YYA0 188 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 A0A1B0GVC2 190 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 A0A1B0GWA3 101 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 C7orf72A4D263 438 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 TMEM229AB2RXF0 380 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 ACOT8O14734 319 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 ACTL6AO96019 429 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 TPOP07202 933 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 TFPIP10646 304 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 CXCR1P25024 350 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 ELK4P28324 431 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 TACR3P29371 465 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 SFTPDP35247 375 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms