RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ZNF780AO75290 641 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 HPNP05981 417 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 FABP1P07148 127 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 GPR4P46093 362 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 EPHA4P54764 986 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 EMP2P54851 167 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 GRB2P62993 217 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 SLC7A9P82251 487 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 MOGAT2Q3SYC2 334 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 ACOT7LQ6ZUV0 252 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 LGI3Q8N145 548 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 ZNF611Q8N823 705 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 SLC24A4Q8NFF2 622 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 M1APQ8TC57 530 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 IMP4Q96G21 291 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 CMTM3Q96MX0 182 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 HIF1ANQ9NWT6 349 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 EHFQ9NZC4 300 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 MYEF2Q9P2K5 600 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 GCAP28676 217 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 SOX3P41225 446 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 ATP1B3P54709 279 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 CDK5Q00535 292 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 ACOT6Q3I5F7 207 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 EXOSC6Q5RKV6 272 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 FBXL22Q6P050 247 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 B3GNT8Q7Z7M8 397 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 PPP1R3BQ86XI6 285 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 OR4N5Q8IXE1 308 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 MKXQ8IYA7 352 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 CCDC116Q8IYX3 515 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 CERS5Q8N5B7 392 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 SAMD8Q96LT4 415 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 NPY6RQ99463 290 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 ARHGDIGQ99819 225 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 FRMPD1Q5SYB0 1578 aa10.57□□□□□ -0.72
LIMCH1-217ENST00000512946 TRBV23OR9-2A0A075B6M9 112 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 TRDV1A0A1B0GX56 115 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 TMEM212A6NML5 194 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 PFKMP08237 780 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 CHRNB4P30926 498 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 CSKP41240 450 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 IL34Q6ZMJ4 242 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 ZNF620Q6ZNG0 422 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 SLC38A6Q8IZM9 456 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 BPIFCQ8NFQ6 507 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 OR8U1Q8NH10 309 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 RAB7BQ96AH8 199 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 BCO2Q9BYV7 579 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 BCO1Q9HAY6 547 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 USP36Q9P275 1121 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 CPA4Q9UI42 421 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 MOKQ9UQ07 419 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 BCORL1Q5H9F3 1711 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 LGALS8O00214 317 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 PTAFRP25105 342 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 CTSOP43234 321 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 TEKQ02763 1124 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 ECH1Q13011 328 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 PDGFRLQ15198 375 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 SF3B4Q15427 424 aaKnown RBP eCLIP10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 AAK1Q2M2I8 961 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 FUT10Q6P4F1 479 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 RNF111Q6ZNA4 994 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 CBLL1Q75N03 491 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 RNF113BQ8IZP6 322 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 CDRT4Q8N9R6 151 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 LINC00116Q8NCU8 138 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 KCNG3Q8TAE7 436 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 ZNF596Q8TC21 504 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 LPPQ93052 612 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 NKX3-1Q99801 234 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 NRIP3Q9NQ35 241 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 FBXO8Q9NRD0 319 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 RHBDD3Q9Y3P4 386 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 OR1A2Q9Y585 309 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 HECW2Q9P2P5 1572 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 E5RGE8 158 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 ASGR2P07307 311 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 THBS1P07996 1170 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 H2AFB1P0C5Y9 115 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 EBPQ15125 230 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 CLEC20AQ6ZU45 233 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 FAM217AQ8IXS0 508 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 KRTCAP2Q8N6L1 136 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 FGFBP2Q9BYJ0 223 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 PSAT1Q9Y617 370 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 DCDC2BA2VCK2 349 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 GPR25O00155 361 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 TXNDC12O95881 172 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 DPP4P27487 766 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 PLCXD2Q0VAA5 305 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 KCTD11Q693B1 232 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 CDH26Q8IXH8 852 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 C11orf54Q9H0W9 315 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 PLEKHA2Q9HB19 425 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 SLC2A4RGQ9NR83 387 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 SLC7A7Q9UM01 511 aa10.56□□□□□ -0.72
LIMCH1-217ENST00000512946 MN1Q10571 1320 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 ANKUB1A6NFN9 424 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms