RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 MBTPS1Q14703 1052 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 ESCO2Q56NI9 601 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 TMEM240Q5SV17 173 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 SPARTQ8N0X7 666 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 SSX3Q99909 188 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 PHF7Q9BWX1 381 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-215ENST00000496447 EVA1AQ9H8M9 152 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 NGBQ9NPG2 151 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 ZNF337Q9Y3M9 751 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 RGPD5Q99666 1765 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 FAM230AA0A1W2PPH8 454 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 ALX3O95076 343 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 IGHG1P01857 330 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 CD27P26842 260 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 ACTBP60709 375 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 ACTG1P63261 375 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 ZNF610Q8N9Z0 462 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 LMNTD1Q8N9Z9 388 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 PDLIM5Q96HC4 596 aaKnown RBP12.3□□□□□ -0.44
PTPRF-215ENST00000496447 NXF5Q9H1B4 397 aaKnown RBP12.3□□□□□ -0.44
PTPRF-215ENST00000496447 ABCG5Q9H222 651 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 MPIG6BO95866 241 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 SERPINA5P05154 406 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 BMP4P12644 408 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 HSD17B7P56937 341 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 PCBD1P61457 104 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 NTRK2Q16620 822 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 VRK2Q86Y07 508 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 ELSPBP1Q96BH3 223 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 UBE2ZQ9H832 354 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-215ENST00000496447 PTTG3PQ9NZH4 202 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 VAPAQ9P0L0 249 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 CXXC1Q9P0U4 656 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-215ENST00000496447 NLKQ9UBE8 527 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 ADAM29Q9UKF5 820 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 ASB4Q9Y574 426 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 C5P01031 1676 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 PBX2P40425 430 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 TNFRSF17Q02223 184 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 PIWIL3Q7Z3Z3 882 aaKnown RBP12.29□□□□□ -0.44
PTPRF-215ENST00000496447 MEX3DQ86XN8 651 aaKnown RBP12.29□□□□□ -0.44
PTPRF-215ENST00000496447 RNF175Q8N4F7 328 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 HAVCR2Q8TDQ0 301 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 ULBP2Q9BZM5 246 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 NWD2Q9ULI1 1742 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 DCDC2BA2VCK2 349 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 CHRM4P08173 479 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 CPOXP36551 454 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 SMAD2Q15796 467 aaKnown RBP12.29□□□□□ -0.44
PTPRF-215ENST00000496447 C9orf135Q5VTT2 229 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 CHDHQ8NE62 594 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-215ENST00000496447 GPR148Q8TDV2 347 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 ADAMTS16Q8TE57 1224 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 FGF21Q9NSA1 209 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 NUP98P52948 1817 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 TRAV18A0A075B6X5 111 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 OTOL1A6NHN0 477 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-215ENST00000496447 ZNF705EA8MWA4 302 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-215ENST00000496447 ITGBL1O95965 494 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-215ENST00000496447 AMY2AP04746 511 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 POU3F1Q03052 451 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-215ENST00000496447 GPR18Q14330 331 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 CNN3Q15417 329 aaKnown RBP12.29□□□□□ -0.44
PTPRF-215ENST00000496447 COL28A1Q2UY09 1125 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 ANKRD33Q7Z3H0 272 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 OR13H1Q8NG92 308 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 CDC6Q99741 560 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 VSX1Q9NZR4 365 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-215ENST00000496447 KCND3Q9UK17 655 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 TRAV27A0A087WT01 109 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 LYRM1O43325 122 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 SLC16A7O60669 478 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 TOXO94900 526 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 GPX3P22352 226 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 MMP12P39900 470 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 ENTPD8Q5MY95 495 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 RHOXF1Q8NHV9 184 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 SENP5Q96HI0 755 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-215ENST00000496447 CTRCQ99895 268 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 WDR83Q9BRX9 315 aaKnown RBP12.29□□□□□ -0.44
PTPRF-215ENST00000496447 OBP2BQ9NPH6 170 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 MAN2C1Q9NTJ4 1040 aa12.29□□□□□ -0.44
PTPRF-215ENST00000496447 PTHP01270 115 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 IFNA17P01571 189 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 FBXO45P0C2W1 286 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 ERVK-16P61578 105 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 SQSTM1Q13501 440 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 GK2Q14410 553 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-215ENST00000496447 OR1Q1Q15612 314 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 PRAMEF20Q5VT98 475 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 LINC00696Q6ZRV3 163 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 OR5W2Q8NH69 310 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 TXNDC15Q96J42 360 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 C7orf34Q96L11 122 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 ATOH8Q96SQ7 321 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 TREX2Q9BQ50 279 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-215ENST00000496447 OR2S2Q9NQN1 319 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 TAS2R8Q9NYW2 309 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 HS3ST3A1Q9Y663 406 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 TVP23AA6NH52 213 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms