RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 FLOT2Q14254 428 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 WBP2NLQ6ICG8 309 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 LCN8Q6JVE9 175 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 POMZP3Q6PJE2 187 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 GRINAQ7Z429 371 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 OR6T1Q8NGN1 323 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 GEMIN6Q8WXD5 167 aaKnown RBP13.18□□□□□ -0.3
BRCA1-223ENST00000494123 MCHR1Q99705 422 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 TRIM2Q9C040 744 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 TMEM27Q9HBJ8 222 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 PLSCR2Q9NRY7 297 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 ACER3Q9NUN7 267 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 SLC7A8Q9UHI5 535 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 PRDM4Q9UKN5 801 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 SVILO95425 2214 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 A0A1B0GVC2 190 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 H3BML4 177 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 LINC01387J3KSC0 135 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 AQP7O14520 342 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 PRKD3O94806 890 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 ACTL6AO96019 429 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 IFNW1P05000 195 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 CHMP24386 653 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 ADH6P28332 368 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 SLC1A3P43003 542 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 GFRA1P56159 465 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 B3GALT5-AS1P59052 145 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 RBPJQ06330 500 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 C19orf57Q0VDD7 668 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 ENPP6Q6UWR7 440 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 DEF8Q6ZN54 512 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 RBM45Q8IUH3 476 aaKnown RBP13.17□□□□□ -0.3
BRCA1-223ENST00000494123 LACC1Q8IV20 430 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 ABTB1Q969K4 478 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-223ENST00000494123 SARAFQ96BY9 339 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 WFDC6Q9BQY6 131 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 SELENONQ9NZV5 590 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 STOML1Q9UBI4 398 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 POMPQ9Y244 141 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 ZNF407Q9C0G0 2248 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 TMEM229AB2RXF0 380 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 NPIPA2E9PIF3 369 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 NPIPA3F8WFD2 350 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 ACOT8O14734 319 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 CIB2O75838 187 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 ABOP16442 354 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 BMP7P18075 431 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 POU3F2P20265 443 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-223ENST00000494123 ELK4P28324 431 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 PTGS2P35354 604 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 KCNC4Q03721 635 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.17□□□□□ -0.3
BRCA1-223ENST00000494123 SLC25A53Q5H9E4 307 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 NHSL2Q5HYW2 709 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 PLEKHM3Q6ZWE6 761 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 ST6GALNAC3Q8NDV1 305 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 OR4D11Q8NGI4 311 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 RNF217Q8TC41 542 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 POC1BQ8TC44 478 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 SMPDL3BQ92485 455 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 ZNF524Q96C55 264 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 PYURFQ96I23 114 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 NPAS1Q99742 590 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 PRR14Q9BWN1 585 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 UGT2B28Q9BY64 529 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 SERINC1Q9NRX5 453 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 SPRR3Q9UBC9 169 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 TNFRSF10DQ9UBN6 386 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 ACAD8Q9UKU7 415 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 ZNF337Q9Y3M9 751 aa13.17□□□□□ -0.3
BRCA1-223ENST00000494123 CFAP46Q8IYW2 2715 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 SHANK1Q9Y566 2161 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 OR14I1A6ND48 311 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 CPSF4LA6NMK7 179 aaKnown RBP13.16□□□□□ -0.3
BRCA1-223ENST00000494123 ETV2O00321 342 aaPredicted RBP13.16□□□□□ -0.3
BRCA1-223ENST00000494123 FMO6PO60774 539 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 HTR2AP28223 471 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 TACR3P29371 465 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 APOBEC1P41238 236 aaKnown RBP13.16□□□□□ -0.3
BRCA1-223ENST00000494123 POLR2HP52434 150 aaKnown RBP13.16□□□□□ -0.3
BRCA1-223ENST00000494123 SELENBP1Q13228 472 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 OR1Q1Q15612 314 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 NPTX1Q15818 432 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 TMEM44Q2T9K0 475 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 ENTPD8Q5MY95 495 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 C1orf146Q5VVC0 180 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 VASNQ6EMK4 673 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 FAM86B1Q8N7N1 296 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 LSMEM1Q8N8F7 131 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 ATP6V1C2Q8NEY4 427 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 POP5Q969H6 163 aaKnown RBP13.16□□□□□ -0.3
BRCA1-223ENST00000494123 TMEM185BQ9H7F4 350 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 CTPS2Q9NRF8 586 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 SPIN1Q9Y657 262 aaPredicted RBP13.16□□□□□ -0.3
BRCA1-223ENST00000494123 DNAJC13O75165 2243 aa13.16□□□□□ -0.3
BRCA1-223ENST00000494123 BCKDKO14874 412 aa13.15□□□□□ -0.3
BRCA1-223ENST00000494123 ZNHIT1O43257 154 aa13.15□□□□□ -0.3
BRCA1-223ENST00000494123 TPST2O60704 377 aa13.15□□□□□ -0.3
BRCA1-223ENST00000494123 NTN1O95631 604 aa13.15□□□□□ -0.3
BRCA1-223ENST00000494123 TPOP07202 933 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms