RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 PLEKHM3Q6ZWE6 761 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 GDF7Q7Z4P5 450 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 LINC00471Q8N535 108 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 DEFB124Q8NES8 71 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 OR7G1Q8NGA0 311 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 SENP5Q96HI0 755 aaPredicted RBP11.2□□□□□ -0.62
HDAC6-230ENST00000488543 MGLLQ99685 303 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 PRRX2Q99811 253 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 ANKRD19PQ9H560 264 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 PNO1Q9NRX1 252 aaKnown RBP11.2□□□□□ -0.62
HDAC6-230ENST00000488543 PLCXD1Q9NUJ7 323 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 ENOPH1Q9UHY7 261 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 MKL2Q9ULH7 1088 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 SRPK3Q9UPE1 567 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 FAM186AA6NE01 2351 aa11.2□□□□□ -0.62
HDAC6-230ENST00000488543 COL27A1Q8IZC6 1860 aaPredicted RBP11.2□□□□□ -0.62
HDAC6-230ENST00000488543 TCRBV16S1A1N1A0A5B0 115 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 PRKNO60260 465 aaPredicted RBP11.19□□□□□ -0.62
HDAC6-230ENST00000488543 DDAH2O95865 285 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 FGF5P12034 268 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 TNNI3P19429 210 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 MXD1Q05195 221 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 TARDBPQ13148 414 aaKnown RBP eCLIP11.19□□□□□ -0.62
HDAC6-230ENST00000488543 IRF3Q14653 427 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 GDPD3Q7L5L3 318 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 MARCH9Q86YJ5 346 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 NKAIN4Q8IVV8 208 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 SLC41A3Q96GZ6 507 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 SDHCQ99643 169 aaPredicted RBP11.19□□□□□ -0.62
HDAC6-230ENST00000488543 B3GALT1Q9Y5Z6 326 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 A0A1W2PNU3 283 aaPredicted RBP11.19□□□□□ -0.62
HDAC6-230ENST00000488543 MEN1O00255 615 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 GKN3PP0CG01 181 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 S100A5P33763 92 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 UGT2B10P36537 528 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 RFX3P48380 749 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 SLC37A1P57057 533 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 ST3GAL3Q11203 375 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 IL11RAQ14626 422 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 NNATQ16517 81 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 ISXQ2M1V0 245 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 PDZK1Q5T2W1 519 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 ZNF385CQ66K41 422 aaPredicted RBP11.19□□□□□ -0.62
HDAC6-230ENST00000488543 CCBE1Q6UXH8 406 aaPredicted RBP11.19□□□□□ -0.62
HDAC6-230ENST00000488543 PRICKLE2Q7Z3G6 844 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 PIP4P1Q86T03 277 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 ATCAYQ86WG3 371 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 STT3BQ8TCJ2 826 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 FCGR1BQ92637 280 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 CDC6Q99741 560 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 CMKLR1Q99788 373 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 VN1R1Q9GZP7 353 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 POLR2J3Q9H1A7 115 aaKnown RBP11.19□□□□□ -0.62
HDAC6-230ENST00000488543 TPK1Q9H3S4 243 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 SLC39A1Q9NY26 324 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 PCDHGB6Q9Y5F9 930 aa11.19□□□□□ -0.62
HDAC6-230ENST00000488543 SPAARA0A1B0GVQ0 90 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 IGKV3-11P04433 115 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 DRD5P21918 477 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 MC2RQ01718 297 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 ALDH6A1Q02252 535 aaKnown RBP11.18□□□□□ -0.62
HDAC6-230ENST00000488543 NSDHLQ15738 373 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 ZNF141Q15928 474 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 DECR1Q16698 335 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 SLX4IPQ5VYV7 408 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 BCORP1Q8N888 145 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 ZNF721Q8TF20 911 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 CNOT9Q92600 299 aaKnown RBP11.18□□□□□ -0.62
HDAC6-230ENST00000488543 ITPKCQ96DU7 683 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 NEDD4LQ96PU5 975 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 Q9N2J8 555 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 MKKSQ9NPJ1 570 aaPredicted RBP11.18□□□□□ -0.62
HDAC6-230ENST00000488543 PRODH2Q9UF12 536 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 CEP250Q9BV73 2442 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 H3BN98 237 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 RGS5O15539 181 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 LRP3O75074 770 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 CCKBRP32239 447 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 RORAP35398 523 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 OMPP47874 163 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 TUBA1BP68363 451 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 DCDP81605 110 aaKnown RBP11.18□□□□□ -0.62
HDAC6-230ENST00000488543 TEKQ02763 1124 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 C12orf73Q69YU5 71 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 LANCL3Q6ZV70 420 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 TUBA1AQ71U36 451 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 ASCL5Q7RTU5 278 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 AKAP14Q86UN6 197 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 KIF18BQ86Y91 864 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 SLC34A3Q8N130 599 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 DEPDC4Q8N2C3 294 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 MINDY2Q8NBR6 621 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 KBTBD8Q8NFY9 601 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 OPALINQ96PE5 141 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 LMF1Q96S06 567 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 ARPC5LQ9BPX5 153 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 PRSS27Q9BQR3 290 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 BARHL1Q9BZE3 327 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 ULBP3Q9BZM4 244 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 CBLCQ9ULV8 474 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms