RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 MUCL1Q96DR8 90 aa11.52□□□□□ -0.57
HDAC6-227ENST00000485102 FAM120BQ96EK7 910 aaKnown RBP11.52□□□□□ -0.57
HDAC6-227ENST00000485102 SIRT3Q9NTG7 399 aaPredicted RBP11.52□□□□□ -0.57
HDAC6-227ENST00000485102 SH3BP4Q9P0V3 963 aa11.52□□□□□ -0.57
HDAC6-227ENST00000485102 GDF2Q9UK05 429 aaPredicted RBP11.52□□□□□ -0.57
HDAC6-227ENST00000485102 CDC42EP3Q9UKI2 254 aa11.52□□□□□ -0.57
HDAC6-227ENST00000485102 B3GALT5Q9Y2C3 310 aa11.52□□□□□ -0.57
HDAC6-227ENST00000485102 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.52□□□□□ -0.57
HDAC6-227ENST00000485102 SVEP1Q4LDE5 3571 aa11.52□□□□□ -0.57
HDAC6-227ENST00000485102 H3BNH8 94 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 CYTIPO60759 359 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 RAMP1O60894 148 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 SERPINE1P05121 402 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 ASMTP46597 345 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 ATP12AP54707 1039 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 VLDLRP98155 873 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 FAPQ12884 760 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 RFTN2Q52LD8 501 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-227ENST00000485102 ARL13AQ5H913 290 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-227ENST00000485102 C6orf52Q5T4I8 152 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 CCNJQ5T5M9 372 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 C11orf71Q6IPW1 123 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 CDC73Q6P1J9 531 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 R3HCC1LQ7Z5L2 792 aaKnown RBP11.51□□□□□ -0.57
HDAC6-227ENST00000485102 C10orf107Q8IVU9 208 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 ZNF619Q8N2I2 560 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 TOR1AIP2Q8NFQ8 470 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 ZNF75CPQ92670 426 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-227ENST00000485102 TNFRSF13CQ96RJ3 184 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 CXorf36Q9H7Y0 433 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 ATP6V1HQ9UI12 483 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 MGAT4BQ9UQ53 548 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 MALRD1Q5VYJ5 2156 aa11.51□□□□□ -0.57
HDAC6-227ENST00000485102 IGHV4-30-2A0A087WSY4 118 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 OR5H1A6NKK0 313 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 SLCO1B7G3V0H7 640 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 KLF11O14901 512 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 OIP5O43482 229 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 AKAP10O43572 662 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 EIF4E2O60573 245 aaKnown RBP11.5□□□□□ -0.57
HDAC6-227ENST00000485102 FGF4P08620 206 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 DHRS4L1P0CG22 281 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 GGT1P19440 569 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 ATP6V1C1P21283 382 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 TTKP33981 857 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 C21orf58P58505 322 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 RASGEF1BQ0VAM2 473 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 LASP1Q14847 261 aaKnown RBP11.5□□□□□ -0.57
HDAC6-227ENST00000485102 PCLAFQ15004 111 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 PDK3Q15120 406 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 TOMM34Q15785 309 aaPredicted RBP11.5□□□□□ -0.57
HDAC6-227ENST00000485102 TMEM249Q2WGJ8 235 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.5□□□□□ -0.57
HDAC6-227ENST00000485102 NATD1Q8N6N6 113 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 OR2T11Q8NH01 316 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 OR5W2Q8NH69 310 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 FBXO30Q8TB52 745 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 CDS1Q92903 461 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 ARL8AQ96BM9 186 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 ADAD1Q96M93 576 aaKnown RBP11.5□□□□□ -0.57
HDAC6-227ENST00000485102 TSSK3Q96PN8 268 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 PAIP2Q9BPZ3 127 aaKnown RBP11.5□□□□□ -0.57
HDAC6-227ENST00000485102 ACTRT3Q9BYD9 372 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 TUBB1Q9H4B7 451 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 CBLN4Q9NTU7 201 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 ZCCHC3Q9NUD5 404 aaKnown RBP11.5□□□□□ -0.57
HDAC6-227ENST00000485102 INTS9Q9NV88 658 aaKnown RBP11.5□□□□□ -0.57
HDAC6-227ENST00000485102 BAIAP2L1Q9UHR4 511 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 CARD8Q9Y2G2 431 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 DTNAQ9Y4J8 743 aa11.5□□□□□ -0.57
HDAC6-227ENST00000485102 IGKV3D-15A0A087WSY6 115 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 ABCD4O14678 606 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 AZIN1O14977 448 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 LSM1O15116 133 aaKnown RBP11.49□□□□□ -0.57
HDAC6-227ENST00000485102 SMAD9O15198 467 aaKnown RBP11.49□□□□□ -0.57
HDAC6-227ENST00000485102 PHF1O43189 567 aaPredicted RBP11.49□□□□□ -0.57
HDAC6-227ENST00000485102 SSX4O60224 188 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 GPRIN2O60269 458 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 LYZL6O75951 148 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 SASH3O75995 380 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 NUDT14O95848 222 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 KRT16P08779 473 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 BCKDHAP12694 445 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 SLC25A16P16260 332 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 IGHV1-2P23083 117 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 PTAFRP25105 342 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 SLC7A1P30825 629 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 RPL3P39023 403 aaKnown RBP11.49□□□□□ -0.57
HDAC6-227ENST00000485102 CDH11P55287 796 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 STX3Q13277 289 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 C1QTNF12Q5T7M4 302 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 AP1ARQ63HQ0 302 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 CLEC6AQ6EIG7 209 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 C3orf33Q6P1S2 294 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 TMEM108Q6UXF1 575 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 SZRD1Q7Z422 152 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 GALNT5Q7Z7M9 940 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 ZNF433Q8N7K0 673 aaPredicted RBP11.49□□□□□ -0.57
HDAC6-227ENST00000485102 ANKRD42Q8N9B4 389 aa11.49□□□□□ -0.57
HDAC6-227ENST00000485102 ADAMTS15Q8TE58 950 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms