RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 TRGV8A0A0C4DH27 118 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 TRIM64CA6NLI5 447 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 BBIP1A8MTZ0 92 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 M0R296 226 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 SGK1O00141 431 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 ACOX3O15254 700 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 DFNA5O60443 496 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 SNNO75324 88 aaPredicted RBP4.66□□□□□ -1.66
USP40-213ENST00000483216 SULT1C4O75897 302 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 BCAS2O75934 225 aaPredicted RBP4.66□□□□□ -1.66
USP40-213ENST00000483216 BBOX1O75936 387 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 CCNE2O96020 404 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 BPGMP07738 259 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 SUPT20HL2P0C7V6 817 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 GSTT2P0CG29 244 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 GSTT2BP0CG30 244 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 UMPSP11172 480 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 ETS2P15036 469 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 IMPDH1P20839 514 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 ACKR3P25106 362 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 CD40LGP29965 261 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 S100A5P33763 92 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 FRKP42685 505 aaPredicted RBP4.66□□□□□ -1.66
USP40-213ENST00000483216 BTDP43251 543 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 PSMD8P48556 350 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 BLVRAP53004 296 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 BASP1P80723 227 aaKnown RBP4.66□□□□□ -1.66
USP40-213ENST00000483216 RAD51Q06609 339 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 ARHGAP1Q07960 439 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 CDC20Q12834 499 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 BNIP2Q12982 314 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 TGFBIQ15582 683 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 PKN2Q16513 984 aaKnown RBP4.66□□□□□ -1.66
USP40-213ENST00000483216 ZNF181Q2M3W8 571 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 IQCCQ4KMZ1 466 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 RFTN2Q52LD8 501 aaPredicted RBP4.66□□□□□ -1.66
USP40-213ENST00000483216 NHSL2Q5HYW2 709 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 RBM48Q5RL73 367 aaKnown RBP4.66□□□□□ -1.66
USP40-213ENST00000483216 PODNL1Q6PEZ8 512 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 NHLRC1Q6VVB1 395 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 RAPH1Q70E73 1250 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 AKAP14Q86UN6 197 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 CLVS1Q8IUQ0 354 aaPredicted RBP4.66□□□□□ -1.66
USP40-213ENST00000483216 DEFB107AQ8IZN7 70 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 SPERTQ8NA61 448 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 OR6F1Q8NGZ6 308 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 BLOC1S5Q8TDH9 187 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 C1orf54Q8WWF1 131 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 TAMM41Q96BW9 452 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 ISOC1Q96CN7 298 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 SNRNP40Q96DI7 357 aaKnown RBP4.66□□□□□ -1.66
USP40-213ENST00000483216 CCDC126Q96EE4 140 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 DYNLL2Q96FJ2 89 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 VMP1Q96GC9 406 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 CEP170P1Q96L14 293 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 C9orf72Q96LT7 481 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 ZNF641Q96N77 438 aaPredicted RBP4.66□□□□□ -1.66
USP40-213ENST00000483216 APOL4Q9BPW4 351 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 ILKAPQ9H0C8 392 aaPredicted RBP4.66□□□□□ -1.66
USP40-213ENST00000483216 GBA3Q9H227 469 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 TPK1Q9H3S4 243 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 RPAP3Q9H6T3 665 aaPredicted RBP4.66□□□□□ -1.66
USP40-213ENST00000483216 DMAC2Q9NW81 257 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 THYN1Q9P016 225 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 STOML2Q9UJZ1 356 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 ADAM28Q9UKQ2 775 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 SNX5Q9Y5X3 404 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 FOCADQ5VW36 1801 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 ATAD5Q96QE3 1844 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 KIF13BQ9NQT8 1826 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 LTBP1Q14766 1721 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 QSER1Q2KHR3 1735 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 MYH1P12882 1939 aa4.66□□□□□ -1.66
USP40-213ENST00000483216 ARHGEF35A5YM69 484 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 TRIM64BA6NI03 449 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 PP2D1A8MPX8 630 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 PSMD12O00232 456 aaPredicted RBP4.65□□□□□ -1.67
USP40-213ENST00000483216 TXNL1O43396 289 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 MED7O43513 233 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 UGT1A9O60656 530 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 SUPT7LO94864 414 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 OXSR1O95747 527 aaPredicted RBP4.65□□□□□ -1.67
USP40-213ENST00000483216 PTTG1O95997 202 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 IGHG1P01857 330 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 TRAPPC2P0DI81 140 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 TRAPPC2BP0DI82 140 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 RALAP11233 206 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 MLNP12872 115 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 COX4I1P13073 169 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 CYP11B1P15538 503 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 UGT1A6P19224 532 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 NCF2P19878 526 aaPredicted RBP4.65□□□□□ -1.67
USP40-213ENST00000483216 UGT1A3P35503 534 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 UGT1A5P35504 534 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 GPC3P51654 580 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 GABARAPL2P60520 117 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 PLOD1Q02809 727 aaPredicted RBP4.65□□□□□ -1.67
USP40-213ENST00000483216 ACY1Q03154 408 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 RBBP4Q09028 425 aa4.65□□□□□ -1.67
USP40-213ENST00000483216 OXA1LQ15070 435 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms