RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 FAM83FQ8NEG4 500 aaPredicted RBP11.1□□□□□ -0.63
SDC1-206ENST00000482879 OR14L1PQ8NHC6 308 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 ST8SIA1Q92185 356 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 ZNF300Q96RE9 604 aaPredicted RBP11.1□□□□□ -0.63
SDC1-206ENST00000482879 CHID1Q9BWS9 393 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 OR2B2Q9GZK3 357 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 DEFB127Q9H1M4 99 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 CCM2LQ9NUG4 571 aaPredicted RBP11.1□□□□□ -0.63
SDC1-206ENST00000482879 QPCTLQ9NXS2 382 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 SELENONQ9NZV5 590 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 NDUFAF4Q9P032 175 aa11.1□□□□□ -0.63
SDC1-206ENST00000482879 RPH3AQ9Y2J0 694 aaPredicted RBP11.1□□□□□ -0.63
SDC1-206ENST00000482879 COL6A6A6NMZ7 2263 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 A0A1B0GWA3 101 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 TRAPPC13A5PLN9 417 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 SHISA8B8ZZ34 492 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 J3KTA2 159 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 FKBP6O75344 327 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 ENTPD5O75356 428 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 DIRAS1O95057 198 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 HPNP05981 417 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 CELA3AP09093 270 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 RHCEP18577 417 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 SLC7A1P30825 629 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 IFNA8P32881 189 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 EIF1P41567 113 aaKnown RBP11.09□□□□□ -0.63
SDC1-206ENST00000482879 SLC1A3P43003 542 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 TAS2R41P59536 307 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 FOXK1P85037 733 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 MERTKQ12866 999 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 FOXF1Q12946 379 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 PIN1Q13526 163 aaPredicted RBP11.09□□□□□ -0.63
SDC1-206ENST00000482879 GLYR1Q49A26 553 aaPredicted RBP11.09□□□□□ -0.63
SDC1-206ENST00000482879 IQCCQ4KMZ1 466 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 WIPI1Q5MNZ9 446 aaPredicted RBP11.09□□□□□ -0.63
SDC1-206ENST00000482879 ZNF613Q6PF04 617 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 FAM180AQ6UWF9 173 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 PIWIL3Q7Z3Z3 882 aaKnown RBP11.09□□□□□ -0.63
SDC1-206ENST00000482879 GRINAQ7Z429 371 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 TSPYL5Q86VY4 417 aaPredicted RBP11.09□□□□□ -0.63
SDC1-206ENST00000482879 LSMEM1Q8N8F7 131 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 OR5M1Q8NGP8 315 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 RNF217Q8TC41 542 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 ADAMTS16Q8TE57 1224 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 PHF10Q8WUB8 498 aaKnown RBP11.09□□□□□ -0.63
SDC1-206ENST00000482879 SLCO4A1Q96BD0 722 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 ZBTB8AQ96BR9 441 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 DUS3LQ96G46 650 aaKnown RBP11.09□□□□□ -0.63
SDC1-206ENST00000482879 MRGPRX4Q96LA9 322 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 NPAS1Q99742 590 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 POLR2J2Q9GZM3 115 aaKnown RBP11.09□□□□□ -0.63
SDC1-206ENST00000482879 ADAM19Q9H013 955 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 POLR2J3Q9H1A7 115 aaKnown RBP11.09□□□□□ -0.63
SDC1-206ENST00000482879 TSPAN10Q9H1Z9 355 aaPredicted RBP11.09□□□□□ -0.63
SDC1-206ENST00000482879 YY1AP1Q9H869 796 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 ZDHHC11Q9H8X9 412 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 ACKR4Q9NPB9 350 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 RIMS3Q9UJD0 308 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 AP4S1Q9Y587 144 aa11.09□□□□□ -0.63
SDC1-206ENST00000482879 NPIPA5E9PKD4 350 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 ETV2O00321 342 aaPredicted RBP11.08□□□□□ -0.64
SDC1-206ENST00000482879 ATXN7O15265 892 aaPredicted RBP11.08□□□□□ -0.64
SDC1-206ENST00000482879 SEMA7AO75326 666 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 OR5F1O95221 314 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 MST1P26927 711 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 TACR3P29371 465 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 MAGEA2P43356 314 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 HTR3AP46098 478 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 POLR2HP52434 150 aaKnown RBP11.08□□□□□ -0.64
SDC1-206ENST00000482879 FOXD4Q12950 439 aaPredicted RBP11.08□□□□□ -0.64
SDC1-206ENST00000482879 NFATC3Q12968 1075 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 CMPK2Q5EBM0 449 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 SLC25A53Q5H9E4 307 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 RAET1LQ5VY80 246 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 ULK3Q6PHR2 472 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 POMZP3Q6PJE2 187 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 GDF7Q7Z4P5 450 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 SIAH3Q8IW03 269 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 GTPBP8Q8N3Z3 284 aaPredicted RBP11.08□□□□□ -0.64
SDC1-206ENST00000482879 PAPD5Q8NDF8 572 aaKnown RBP11.08□□□□□ -0.64
SDC1-206ENST00000482879 POC1BQ8TC44 478 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 DNAJA4Q8WW22 397 aaPredicted RBP11.08□□□□□ -0.64
SDC1-206ENST00000482879 PYDC1Q8WXC3 89 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 NR4A3Q92570 626 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 C3orf49Q96BT1 292 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 SLC41A3Q96GZ6 507 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 PRRC1Q96M27 445 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 SFXN2Q96NB2 322 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 ZNF347Q96SE7 839 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 PIP5K1AQ99755 562 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 PIGQQ9BRB3 760 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 FNDC11Q9BVV2 318 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 SLC6A15Q9H2J7 730 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 LDAHQ9H6V9 325 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 EXO5Q9H790 373 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 RHCGQ9UBD6 479 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 OSGIN1Q9UJX0 560 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 A4GNTQ9UNA3 340 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 NPIPA1Q9UND3 350 aa11.08□□□□□ -0.64
SDC1-206ENST00000482879 RP1L1Q8IWN7 2480 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms