RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 BTBD2Q9BX70 525 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 CENPHQ9H3R5 247 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 UBQLN4Q9NRR5 601 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 DUSP22Q9NRW4 184 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 RASSF1Q9NS23 344 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 SIRT3Q9NTG7 399 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 GIN1Q9NXP7 522 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 GIMAP2Q9UG22 337 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 PACSIN3Q9UKS6 424 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 RAB21Q9UL25 225 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 EDARQ9UNE0 448 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 EIF3LQ9Y262 564 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 ZNF337Q9Y3M9 751 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 AP4B1Q9Y6B7 739 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 ABCA4P78363 2273 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 A0A087WZY1 265 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 A0A1W2PNV4 684 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 A0A1W2PQD3 144 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 OR2M5A3KFT3 312 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 WDR91A4D1P6 747 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 SCDO00767 359 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 CFLARO15519 480 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 SEC14L5O43304 696 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 GMFGO60234 142 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 TNFSF13O75888 250 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 GOSR1O95249 250 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 C6orf47O95873 294 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 TGM6O95932 706 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 HMGN2P05204 90 aaKnown RBP6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 TUBBP07437 444 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 MYZAPP0CAP1 466 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 G6PDP11413 515 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 FCGR2AP12318 317 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 CD1EP15812 388 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 ATP6V1C1P21283 382 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 CCT3P49368 545 aaKnown RBP6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 ZNF41P51814 821 aaPredicted RBP6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 C21orf58P58505 322 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 RPS3AP61247 264 aaKnown RBP6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 OCRLQ01968 901 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 EMX2Q04743 252 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 HNRNPA0Q13151 305 aaKnown RBP6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 TP53BP2Q13625 1128 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 FGFBP1Q14512 234 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 LASP1Q14847 261 aaKnown RBP6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 DAZAP2Q15038 168 aaPredicted RBP6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 TESK1Q15569 626 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 PDCD2Q16342 344 aaPredicted RBP6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 TMEM44Q2T9K0 475 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 SMU1Q2TAY7 513 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 CEP85LQ5SZL2 805 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 CCNJQ5T5M9 372 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 CDC73Q6P1J9 531 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 BHLHB9Q6PI77 547 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 APOOLQ6UXV4 268 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 SPNS3Q6ZMD2 512 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 CAMKMTQ7Z624 323 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 CROCCP2Q86T23 111 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 LUZP2Q86TE4 346 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 EXOC3L1Q86VI1 746 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 KRTCAP2Q8N6L1 136 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 METTL25Q8N6Q8 603 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 CNEP1R1Q8N9A8 125 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 GATSQ8NAP1 163 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 ZNF527Q8NB42 609 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 OR5M1Q8NGP8 315 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 PSMA8Q8TAA3 256 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 SFXN5Q8TD22 340 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 ACTRT2Q8TDY3 377 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 ADAMTS15Q8TE58 950 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 SMPDL3BQ92485 455 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 CDS1Q92903 461 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 NINJ1Q92982 152 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 MOAP1Q96BY2 351 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 ZNF503Q96F45 646 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 OTUB1Q96FW1 271 aaPredicted RBP6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 C16orf58Q96GQ5 468 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 YIPF4Q9BSR8 244 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 PINK1Q9BXM7 581 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 ACTRT3Q9BYD9 372 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 PIGUQ9H490 435 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 GALNT8Q9NY28 637 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 ASIC5Q9NY37 505 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 CGGBP1Q9UFW8 167 aaPredicted RBP6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 FAF1Q9UNN5 650 aaPredicted RBP6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 RAP2CQ9Y3L5 183 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 ZNF175Q9Y473 711 aa6.11□□□□□ -1.43
CCDC88A-213ENST00000476903 A8MXE2 369 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 H0YC42 278 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 H3BNH8 94 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 ITM2AO43736 263 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 DHRS4L1P0CG22 281 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 DNAJA1P31689 397 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 SOAT1P35610 550 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 CPOXP36551 454 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 SLC1A6P48664 564 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 RPL14P50914 215 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 SUCLG1P53597 346 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 TPD52P55327 224 aaPredicted RBP6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms