RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 Q6ZT83 130 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 OR5AK3PQ8NH89 298 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 AENQ8WTP8 325 aaKnown RBP10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 OIT3Q8WWZ8 545 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ST8SIA1Q92185 356 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 REXO5Q96IC2 774 aaKnown RBP10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TACO1Q9BSH4 297 aaKnown RBP10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 GRIP2Q9C0E4 1043 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 C20orf27Q9GZN8 174 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ZNF350Q9GZX5 532 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SAP130Q9H0E3 1048 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 CXorf56Q9H5V9 222 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 CUBNO60494 3623 aa10.86□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 IGKV3D-15A0A087WSY6 115 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 DPRXA6NFQ7 191 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 KIAA1324LA8MWY0 1029 aaPredicted RBP10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SMAD7O15105 426 aaKnown RBP10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SMAD9O15198 467 aaKnown RBP10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ITM2AO43736 263 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 STX11O75558 287 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SKAP2O75563 359 aaPredicted RBP10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 NUDT14O95848 222 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 AK1P00568 194 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 CD8AP01732 235 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 UBL4AP11441 157 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 COX5AP20674 150 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 PGM1P36871 562 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ATP5J2P56134 94 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SESN3P58005 492 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 RPS26P62854 115 aaKnown RBP10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 PLAURQ03405 335 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 MAD2L1Q13257 205 aaPredicted RBP10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TNK1Q13470 666 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 CBFBQ13951 182 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 MAPK14Q16539 360 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 PGGHGQ32M88 737 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TIGD2Q4W5G0 525 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 OR4F3Q6IEY1 312 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TMPPEQ6ZT21 453 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ATG4DQ86TL0 474 aaPredicted RBP10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 CLECL1Q8IZS7 167 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 CLEC4FQ8N1N0 589 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 NEUROG1Q92886 237 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TUBGCP3Q96CW5 907 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ZG16BQ96DA0 208 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 CHMP6Q96FZ7 201 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 THUMPD3Q9BV44 507 aaKnown RBP10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TRIM2Q9C040 744 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 AKTIPQ9H8T0 292 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ACER3Q9NUN7 267 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 KLHL9Q9P2J3 617 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 HAO1Q9UJM8 370 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 LAMP3Q9UQV4 416 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 RNF115Q9Y4L5 304 aa10.85□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ANK3Q12955 4377 aaKnown RBP10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 IGHV3-15A0A0B4J1V0 119 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 PRAMEF27A3QJZ7 478 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 BCAS1O75363 584 aaPredicted RBP10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 DHRS4L1P0CG22 281 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 NTF4P34130 210 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 IFFO1Q0D2I5 559 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 RASGEF1BQ0VAM2 473 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 FUT5Q11128 374 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 PDK3Q15120 406 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SPDYE7PQ495Y7 208 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ZNF672Q499Z4 452 aaPredicted RBP10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 C3orf33Q6P1S2 294 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 BHLHA15Q7RTS1 189 aaPredicted RBP10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 OLIG3Q7RTU3 272 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ATP6V1C2Q8NEY4 427 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 KISS1RQ969F8 398 aaPredicted RBP10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TESCQ96BS2 214 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SORT1Q99523 831 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 MDFIQ99750 246 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 CCDC106Q9BWC9 280 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 QRSL1Q9H0R6 528 aaKnown RBP10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ESRP2Q9H6T0 727 aaKnown RBP10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 NGBQ9NPG2 151 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 NOP53Q9NZM5 478 aaKnown RBP10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 PRSS50Q9UI38 385 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ADAM21Q9UKJ8 722 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 MKLN1Q9UL63 735 aa10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.84□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 MXRA5Q9NR99 2828 aa10.83□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 UQCRHLA0A096LP55 91 aa10.83□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 PRSS51A0A1B0GVH4 220 aa10.83□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 SHISA9B4DS77 424 aa10.83□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 INAFM1C9JVW0 142 aa10.83□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 BIRC5O15392 142 aa10.83□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CFLARO15519 480 aa10.83□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 KIAA0513O60268 411 aa10.83□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 ADAM11O75078 769 aa10.83□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CD3EP07766 207 aa10.83□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 IGHV1-2P23083 117 aa10.83□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 IL32P24001 234 aa10.83□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 DIO1P49895 249 aa10.83□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 RPS4XP62701 263 aaKnown RBP10.83□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 BSPH1Q075Z2 132 aa10.83□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CASP8Q14790 479 aa10.83□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 GPR68Q15743 365 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms