RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 LTBQ06643 244 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 TIGD2Q4W5G0 525 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 SPANXN4Q5MJ08 99 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 C3orf33Q6P1S2 294 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 PRSS57Q6UWY2 283 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 C16orf62Q7Z3J2 963 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 PSD2Q9BQI7 771 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 THUMPD3Q9BV44 507 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 PARD6BQ9BYG5 372 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 NUF2Q9BZD4 464 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 GSX2Q9BZM3 304 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 BCO1Q9HAY6 547 aa16.7■□□□□ 0.26
CCDC88B-206ENST00000473405 PRSS51A0A1B0GVH4 220 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 ZNF814B7Z6K7 855 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 SMAD9O15198 467 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 CSTAP01040 98 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 C1QCP02747 245 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 UBTFL6P0CB48 400 aaPredicted RBP16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 PTH2RP49190 550 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 PLAURQ03405 335 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 CASP8Q14790 479 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 AP1ARQ63HQ0 302 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 SAXO2Q658L1 398 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 TYW3Q6IPR3 259 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 TNFAIP8L2Q6P589 184 aaPredicted RBP16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 SEZ6L2Q6UXD5 910 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 PLEKHM3Q6ZWE6 761 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 YTHDF3Q7Z739 585 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 LRRC34Q8IZ02 419 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 SLC43A2Q8N370 569 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 STEAP2Q8NFT2 490 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 ST8SIA1Q92185 356 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 RAB8BQ92930 207 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 ZBTB9Q96C00 473 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 NEURL3Q96EH8 262 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 Q96MF0 132 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 EXD2Q9NVH0 621 aa16.69■□□□□ 0.26
CCDC88B-206ENST00000473405 PLCE1Q9P212 2302 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 MXRA5Q9NR99 2828 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 PRAMEF27A3QJZ7 478 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 H7C1Q1 480 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 HS3ST1O14792 307 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 CYP7B1O75881 506 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 HEXAP06865 529 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 GUSBP08236 651 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 ALDOCP09972 364 aaKnown RBP16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 OR12D1P0DN82 309 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 PAX1P15863 534 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 UQCRC2P22695 453 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 EDNRAP25101 427 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 PGM1P36871 562 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 SESN3P58005 492 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 SFRP5Q5T4F7 317 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 ANXA8L1Q5VT79 327 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 OGFOD2Q6N063 350 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 CLEC9AQ6UXN8 241 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 FRRS1Q6ZNA5 592 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 EIF3MQ7L2H7 374 aaKnown RBP16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 RAB3IL1Q8TBN0 382 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 TEX37Q96LM6 180 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 OR5B2Q96R09 309 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 HDHD5Q9BXW7 423 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 SAP130Q9H0E3 1048 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 MEAF6Q9HAF1 191 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 PNPOQ9NVS9 261 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 KLHL9Q9P2J3 617 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 RAB21Q9UL25 225 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 PCDHGB4Q9UN71 923 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 WDR45Q9Y484 360 aa16.68■□□□□ 0.26
CCDC88B-206ENST00000473405 HIVEP2P31629 2446 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 TRIM64A6NGJ6 449 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 TRIM64BA6NI03 449 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 E9PBE3 544 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 CYTIPO60759 359 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 CPSF4O95639 269 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 AGR2O95994 175 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 ADAP00813 363 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 LBPP18428 481 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 CLNS1AP54105 237 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 BST1Q10588 318 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 MERTKQ12866 999 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 TAB1Q15750 504 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 DPY19L1Q2PZI1 675 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 FAM174BQ3ZCQ3 159 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 CEP85LQ5SZL2 805 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 Q6ZT83 130 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 ATG4DQ86TL0 474 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 ZNF611Q8N823 705 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 XAGE5Q8WWM1 108 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 OIT3Q8WWZ8 545 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 ZNF75CPQ92670 426 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 KISS1RQ969F8 398 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 ROPN1LQ96C74 230 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 ZG16BQ96DA0 208 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 CCDC115Q96NT0 180 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 ZNF300Q96RE9 604 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 SLC35A5Q9BS91 424 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 TACO1Q9BSH4 297 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 CCDC106Q9BWC9 280 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 CENPHQ9H3R5 247 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms