RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 C22orf34Q6ZV56 151 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 FCRLAQ7L513 359 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 HMGN2P46Q86SG4 172 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 ROPN1LQ96C74 230 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 NEURL3Q96EH8 262 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 LAT2Q9GZY6 243 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 QRSL1Q9H0R6 528 aaKnown RBP14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 WDR55Q9H6Y2 383 aaPredicted RBP14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 THAP1Q9NVV9 213 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 BEX4Q9NWD9 120 aaPredicted RBP14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 HDAC3O15379 428 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 SNNO75324 88 aaPredicted RBP14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 NID1P14543 1247 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 IL12AP29459 219 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 HPCAP84074 193 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 RNPS1Q15287 305 aaKnown RBP14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 TIGD2Q4W5G0 525 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 GPAT3Q53EU6 434 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 SLC25A53Q5H9E4 307 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 C3orf33Q6P1S2 294 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 CLEC9AQ6UXN8 241 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 BEND4Q6ZU67 534 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 EIF3MQ7L2H7 374 aaKnown RBP14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 NUFIP2Q7Z417 695 aaKnown RBP14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 SPATA19Q7Z5L4 167 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 TUSC5Q8IXB3 177 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 ZNF619Q8N2I2 560 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 MARK4Q96L34 752 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 CCDC115Q96NT0 180 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 HS3ST6Q96QI5 342 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 OR5B2Q96R09 309 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 PANX1Q96RD7 426 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 INPP5KQ9BT40 448 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 FANCFQ9NPI8 374 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 NKIRAS1Q9NYS0 192 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 KLHL13Q9P2N7 655 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 BTNL2Q9UIR0 455 aa14.01□□□□□ -0.17
CCDC88B-205ENST00000472524 TRPC5OSA6NMA1 111 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 BCAS1O75363 584 aaPredicted RBP14□□□□□ -0.17
CCDC88B-205ENST00000472524 ERLIN1O75477 346 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 H6PDO95479 791 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 THBDP07204 575 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 PGCP20142 388 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 ENPP1P22413 925 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 CDKN2CP42773 168 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 SESN3P58005 492 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 MERTKQ12866 999 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 ATG16L1Q676U5 607 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 FRRS1Q6ZNA5 592 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 RNF130Q86XS8 419 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 WFDC8Q8IUA0 241 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 ST8SIA1Q92185 356 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 ARL8AQ96BM9 186 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 OR52E6Q96RD3 313 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 ZBTB18Q99592 522 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 ACTR6Q9GZN1 396 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 POLE3Q9NRF9 147 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 GPR45Q9Y5Y3 372 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 CADP27708 2225 aa14□□□□□ -0.17
CCDC88B-205ENST00000472524 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 PRAMEF27A3QJZ7 478 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 CCDC154A6NI56 674 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 ETV2O00321 342 aaPredicted RBP13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 HMGN4O00479 90 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 PRKD3O94806 890 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 GSNP06396 782 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 PGRP06401 933 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 PPP3CBP16298 524 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 LOXP28300 417 aaPredicted RBP13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 RYKP34925 604 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 PGM1P36871 562 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 RAC3P60763 192 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 CHRNEQ04844 493 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 SHEQ5VZ18 495 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 ALKBH2Q6NS38 261 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 DNAJC14Q6Y2X3 702 aaPredicted RBP13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 ZNF621Q6ZSS3 439 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 PLEKHM3Q6ZWE6 761 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 CIARTQ8N365 385 aaPredicted RBP13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 TRIML2Q8N7C3 387 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 ZNF563Q8TA94 476 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 PNPT1Q8TCS8 783 aaKnown RBP13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 TMEM234Q8WY98 164 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 ZG16BQ96DA0 208 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 MANSC1Q9H8J5 431 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 TMBIM4Q9HC24 238 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 SERINC1Q9NRX5 453 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 SLC35A3Q9Y2D2 325 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 USF3Q68DE3 2245 aa13.99□□□□□ -0.17
CCDC88B-205ENST00000472524 CLDN24A6NM45 220 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 DNAJA2O60884 412 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 TSC22D1Q15714 1073 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 SYPL1Q16563 259 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 ACKR1Q16570 336 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 SLC9B1Q4ZJI4 515 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 BEX5Q5H9J7 111 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 Q5PR19 223 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 TFAP2EQ6VUC0 442 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 SLC43A2Q8N370 569 aa13.98□□□□□ -0.17
CCDC88B-205ENST00000472524 ANKFN1Q8N957 763 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms