RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 ZSWIM7Q19AV6 140 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 SLC25A53Q5H9E4 307 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 LCN8Q6JVE9 175 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 ZNF550Q7Z398 422 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 TSEN54Q7Z6J9 526 aaKnown RBP13.37□□□□□ -0.27
COL9A3-209ENST00000469852 CADM2Q8N3J6 435 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 GTPBP8Q8N3Z3 284 aaPredicted RBP13.37□□□□□ -0.27
COL9A3-209ENST00000469852 ZNF563Q8TA94 476 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 RASSF5Q8WWW0 418 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 PROX1Q92786 737 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 RELTQ969Z4 430 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 UGT2B28Q9BY64 529 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 LDAHQ9H6V9 325 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 CTPS2Q9NRF8 586 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 ADPRHL2Q9NX46 363 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 KLHL28Q9NXS3 571 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 BAG5Q9UL15 447 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 POMPQ9Y244 141 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 ZNF337Q9Y3M9 751 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 NBASA2RRP1 2371 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 ZGRF1Q86YA3 2104 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 H0YC42 278 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 FAAHO00519 579 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 SUSD5O60279 629 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 HCN1O60741 890 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 OPN1LWP04000 364 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 BMP7P18075 431 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 FUT4P22083 530 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 ERFP50548 548 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 TPD52P55327 224 aaPredicted RBP13.36□□□□□ -0.27
COL9A3-209ENST00000469852 DLX5P56178 289 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 KCNC4Q03721 635 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 CRYZQ08257 329 aaKnown RBP13.36□□□□□ -0.27
COL9A3-209ENST00000469852 ELOAQ14241 798 aaKnown RBP13.36□□□□□ -0.27
COL9A3-209ENST00000469852 C3AR1Q16581 482 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 ZSCAN26Q16670 478 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 POMZP3Q6PJE2 187 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 PLEKHM3Q6ZWE6 761 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 YTHDF3Q7Z739 585 aaKnown RBP13.36□□□□□ -0.27
COL9A3-209ENST00000469852 DHFR2Q86XF0 187 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 GHDCQ8N2G8 530 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 OR52E4Q8NGH9 312 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 PHF10Q8WUB8 498 aaKnown RBP13.36□□□□□ -0.27
COL9A3-209ENST00000469852 SLC35B4Q969S0 331 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 MIB2Q96AX9 1013 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 ZBTB8AQ96BR9 441 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 SFXN2Q96NB2 322 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 EXO5Q9H790 373 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 ACER3Q9NUN7 267 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 SLC13A4Q9UKG4 626 aa13.36□□□□□ -0.27
COL9A3-209ENST00000469852 MAST4O15021 2626 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 C7orf72A4D263 438 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 FAM47E-STBD1D6RA91 191 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 H3BML4 177 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 AQP7O14520 342 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 GMNNO75496 209 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 THY1P04216 161 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 SEMG1P04279 462 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 GP1BBP13224 206 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 EDN3P14138 238 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 ZNF17P17021 662 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 SHC1P29353 583 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 SLC1A3P43003 542 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 GTF3C1Q12789 2109 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 MERTKQ12866 999 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 TRAP1Q12931 704 aaKnown RBP13.35□□□□□ -0.27
COL9A3-209ENST00000469852 MRPL49Q13405 166 aaKnown RBP13.35□□□□□ -0.27
COL9A3-209ENST00000469852 OR1Q1Q15612 314 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 GLYR1Q49A26 553 aaPredicted RBP13.35□□□□□ -0.27
COL9A3-209ENST00000469852 IFI44LQ53G44 452 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 KRTCAP3Q53RY4 240 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 VASNQ6EMK4 673 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 GFRALQ6UXV0 394 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 DEF8Q6ZN54 512 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 EID3Q8N140 333 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 ST8SIA1Q92185 356 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 C3orf49Q96BT1 292 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 MCHR1Q99705 422 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 PIGQQ9BRB3 760 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 AMBRA1Q9C0C7 1298 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 ADAM19Q9H013 955 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 MUC13Q9H3R2 512 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 TMEM185BQ9H7F4 350 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 TESQ9UGI8 421 aaKnown RBP13.35□□□□□ -0.27
COL9A3-209ENST00000469852 RPS6KA6Q9UK32 745 aa13.35□□□□□ -0.27
COL9A3-209ENST00000469852 SAMD4AQ9UPU9 718 aaKnown RBP13.35□□□□□ -0.27
COL9A3-209ENST00000469852 HECTD1Q9ULT8 2610 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 RELNP78509 3460 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 A0A1B0GWA3 101 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 CPSF4LA6NMK7 179 aaKnown RBP13.34□□□□□ -0.27
COL9A3-209ENST00000469852 NPIPA2E9PIF3 369 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 NPIPA3F8WFD2 350 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 J3KTA2 159 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 LYPD3O95274 346 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 PEPDP12955 493 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 CHMP24386 653 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 TACR3P29371 465 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 YAP1P46937 504 aaKnown RBP13.34□□□□□ -0.27
COL9A3-209ENST00000469852 LHX2P50458 406 aa13.34□□□□□ -0.27
COL9A3-209ENST00000469852 CLDN15P56746 228 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms