RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 DGKQP52824 942 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 EEF1A1P68104 462 aaKnown RBP6.55□□□□□ -1.36
USP54-208ENST00000461520 MRPS22P82650 360 aaKnown RBP6.55□□□□□ -1.36
USP54-208ENST00000461520 ACSM2AQ08AH3 577 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 EEF1A1P5Q5VTE0 462 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 ACSM2BQ68CK6 577 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 AAGABQ6PD74 315 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 CAMKMTQ7Z624 323 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 IFNEQ86WN2 208 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 CDC20BQ86Y33 519 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 FAM9CQ8IZT9 166 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 CEP112Q8N8E3 955 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 C9orf106Q8NAJ2 232 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 OR9A2Q8NGT5 310 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 C16orf78Q8WTQ4 265 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 RNF138Q8WVD3 245 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 KAT2AQ92830 837 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 EXOSC8Q96B26 276 aaKnown RBP6.55□□□□□ -1.36
USP54-208ENST00000461520 CCDC126Q96EE4 140 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 APIPQ96GX9 242 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 VSTM2LQ96N03 204 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 TUBA1CQ9BQE3 449 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 SFXN3Q9BWM7 321 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 SERHLQ9NQF3 203 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 TAS2R10Q9NYW0 307 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 SENP1Q9P0U3 644 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 PSMC3IPQ9P2W1 217 aaPredicted RBP6.55□□□□□ -1.36
USP54-208ENST00000461520 DCDC2Q9UHG0 476 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 GRID1Q9ULK0 1009 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 A0A087WV62 115 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 CLCA1A8K7I4 914 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 MYO1GB0I1T2 1018 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 F2RL2O00254 374 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 ANXA4P09525 319 aaPredicted RBP6.54□□□□□ -1.36
USP54-208ENST00000461520 PPP3CBP16298 524 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 ZNF708P17019 499 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 MALP21145 153 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 DNASE1P24855 282 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 SLCO1A2P46721 670 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 LHX2P50458 406 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 AGFG1P52594 562 aaKnown RBP6.54□□□□□ -1.36
USP54-208ENST00000461520 GAS1P54826 345 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 DSCR4P56555 118 aaPredicted RBP6.54□□□□□ -1.36
USP54-208ENST00000461520 PSG6Q00889 435 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 SRYQ05066 204 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 ZNF763Q0D2J5 394 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 GAB1Q13480 694 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 SLC29A2Q14542 456 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 BCL2A1Q16548 175 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 FAM219BQ5XKK7 198 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 NPSR1Q6W5P4 371 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 TGIF2LYQ8IUE0 185 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 OR7G2Q8NG99 324 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 FAM76AQ8TAV0 307 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 RDH11Q8TC12 318 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 BBS4Q96RK4 519 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 PIGMQ9H3S5 423 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 LIME1Q9H400 295 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 ANKRA2Q9H9E1 313 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 FOLH1BQ9HBA9 442 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 MID1IP1Q9NPA3 183 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 MIEF1Q9NQG6 463 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 SDHAF3Q9NRP4 125 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 TAS2R7Q9NYW3 318 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 CLCF1Q9UBD9 225 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 DKKL1Q9UK85 242 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 FBXL2Q9UKC9 423 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 WBP11Q9Y2W2 641 aaKnown RBP6.54□□□□□ -1.36
USP54-208ENST00000461520 TIMM22Q9Y584 194 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 ARHGAP21Q5T5U3 1957 aa6.54□□□□□ -1.36
USP54-208ENST00000461520 VPS13CQ709C8 3753 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 NINQ8N4C6 2090 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 TTC36A6NLP5 189 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 A8MXE2 369 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 G3V2L1 256 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 GOLGA8RI6L899 631 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 PLOD2O00469 737 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 UBFD1O14562 309 aaKnown RBP6.53□□□□□ -1.36
USP54-208ENST00000461520 HCRTR2O43614 444 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 ZIC3O60481 467 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 GLRA3O75311 464 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 RSL1D1O76021 490 aaKnown RBP6.53□□□□□ -1.36
USP54-208ENST00000461520 RAF1P04049 648 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 CRHP06850 196 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 IFI6P09912 130 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 MYL2P10916 166 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 PEPDP12955 493 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 KLK2P20151 261 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 DPP4P27487 766 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 NTSP30990 170 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 EVI2BP34910 448 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 CPA2P48052 419 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 CCT5P48643 541 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 STARP49675 285 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 NCBP2P52298 156 aaKnown RBP eCLIP6.53□□□□□ -1.36
USP54-208ENST00000461520 DIO3P55073 304 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 FOXA1P55317 472 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 CLDN18P56856 261 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 BTKQ06187 659 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 PIGFQ07326 219 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms