RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.93□□□□□ -1.3
CD44-211ENST00000442151 FAM234BA2RU67 622 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 TMEM247A6NEH6 219 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 TRPC5OSA6NMA1 111 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 H0YC42 278 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 SKAP2O75563 359 aaPredicted RBP6.93□□□□□ -1.3
CD44-211ENST00000442151 CSTAP01040 98 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 HEXAP06865 529 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 G6PDP11413 515 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 BMP4P12644 408 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 PRKCAP17252 672 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 S100A3P33764 101 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 CHI3L1P36222 383 aaPredicted RBP6.93□□□□□ -1.3
CD44-211ENST00000442151 KHKP50053 298 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 CCR4P51679 360 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 TPD52P55327 224 aaPredicted RBP6.93□□□□□ -1.3
CD44-211ENST00000442151 RPS4XP62701 263 aaKnown RBP6.93□□□□□ -1.3
CD44-211ENST00000442151 ZNF117Q03924 483 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 LTBQ06643 244 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 RASGEF1BQ0VAM2 473 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 STX3Q13277 289 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 QPRTQ15274 297 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 GPR68Q15743 365 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 ZNF239Q16600 458 aaKnown RBP6.93□□□□□ -1.3
CD44-211ENST00000442151 CTU2Q2VPK5 515 aaKnown RBP6.93□□□□□ -1.3
CD44-211ENST00000442151 ANKRD34AQ69YU3 496 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 KLHL17Q6TDP4 642 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 PLXDC2Q6UX71 529 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 DNAJC14Q6Y2X3 702 aaPredicted RBP6.93□□□□□ -1.3
CD44-211ENST00000442151 GALNT5Q7Z7M9 940 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 MTDHQ86UE4 582 aaKnown RBP6.93□□□□□ -1.3
CD44-211ENST00000442151 WFDC8Q8IUA0 241 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 RIMKLAQ8IXN7 391 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 ZNF440Q8IYI8 595 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 ZNF100Q8IYN0 542 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 MREGQ8N565 214 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 WFDC11Q8NEX6 87 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 ATP6V1C2Q8NEY4 427 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 OR2W6PQ8NHA6 318 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 RFWD2Q8NHY2 731 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 ZNF563Q8TA94 476 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 AGR3Q8TD06 166 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 PLPPR2Q96GM1 343 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 THUMPD3Q9BV44 507 aaKnown RBP6.93□□□□□ -1.3
CD44-211ENST00000442151 KRTAP4-2Q9BYR5 136 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 POTEKPQ9BYX7 375 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 C12orf49Q9H741 205 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 CXorf36Q9H7Y0 433 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 KCNK9Q9NPC2 374 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 GPATCH2Q9NW75 528 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 CALML5Q9NZT1 146 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 CLEC4AQ9UMR7 237 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 HDGFL3Q9Y3E1 203 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 RNF115Q9Y4L5 304 aa6.93□□□□□ -1.3
CD44-211ENST00000442151 PRRC2AP48634 2157 aaKnown RBP6.93□□□□□ -1.3
CD44-211ENST00000442151 SHISA8B8ZZ34 492 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 NPIPB9F8W1W9 429 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 SULT2B1O00204 365 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 KLF4O43474 513 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 TYROBPO43914 113 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 EIF1BO60739 113 aaKnown RBP6.92□□□□□ -1.3
CD44-211ENST00000442151 CYTIPO60759 359 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 CYP7B1O75881 506 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 CPSF4O95639 269 aaKnown RBP6.92□□□□□ -1.3
CD44-211ENST00000442151 KRT75O95678 551 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 TFPIP10646 304 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 SLC1A6P48664 564 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 HBA1P69905 142 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 FOXF1Q12946 379 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 PTGR1Q14914 329 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 CHI3L2Q15782 390 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 GSTA3Q16772 222 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 HHATQ5VTY9 493 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 AP1ARQ63HQ0 302 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 ATG16L1Q676U5 607 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 OR7E24Q6IFN5 339 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 ZCCHC23Q6ZST2 131 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 TMPPEQ6ZT21 453 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 Q6ZT83 130 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 BHLHA15Q7RTS1 189 aaPredicted RBP6.92□□□□□ -1.3
CD44-211ENST00000442151 TUSC5Q8IXB3 177 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 ZNF619Q8N2I2 560 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 ARFGAP2Q8N6H7 521 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 GLB1L3Q8NCI6 653 aaPredicted RBP6.92□□□□□ -1.3
CD44-211ENST00000442151 PIGXQ8TBF5 258 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 POC1BQ8TC44 478 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 XAGE5Q8WWM1 108 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 TESCQ96BS2 214 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 Q96MF0 132 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 C1orf50Q9BV19 199 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 MECRQ9BV79 373 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 ALG2Q9H553 416 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 AKTIPQ9H8T0 292 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 ANKZF1Q9H8Y5 726 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 MTHFD2LQ9H903 347 aaPredicted RBP6.92□□□□□ -1.3
CD44-211ENST00000442151 BCO1Q9HAY6 547 aa6.92□□□□□ -1.3
CD44-211ENST00000442151 EXOSC3Q9NQT5 275 aaKnown RBP6.92□□□□□ -1.3
CD44-211ENST00000442151 ZNF701Q9NV72 531 aaPredicted RBP6.92□□□□□ -1.3
CD44-211ENST00000442151 THUMPD1Q9NXG2 353 aaKnown RBP6.92□□□□□ -1.3
CD44-211ENST00000442151 BTNL2Q9UIR0 455 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms