RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ACER1Q8TDN7 264 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 ANKRD9Q96BM1 317 aaPredicted RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 TMEM38AQ9H6F2 299 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 SERTAD3Q9UJW9 196 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 ZFC3H1O60293 1989 aaKnown RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 ARPC1BO15143 372 aaKnown RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 CLN5O75503 358 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 TSPAN12O95859 305 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 PLGP00747 810 aaPredicted RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 TSPAN31Q12999 210 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 LRRC26Q2I0M4 334 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 PCED1BQ96HM7 432 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 MED9Q9NWA0 146 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 A0A1W2PQH9 124 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 NPIPA2E9PIF3 369 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 NPIPA3F8WFD2 350 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 H7BYZ3 331 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 NAGAP17050 411 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 TNFSF8P32971 234 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 OPRD1P41143 372 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 CSNK2A1P68400 391 aaPredicted RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 TIGITQ495A1 244 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 BTNL8Q6UX41 500 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 ADGRE4PQ86SQ3 457 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 BAGE3Q86Y29 109 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 BAGE2Q86Y30 109 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 FOXRED2Q8IWF2 684 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 SLC38A6Q8IZM9 456 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 CSNK2A3Q8NEV1 391 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 OR52P1PQ8NH57 321 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 CUTCQ9NTM9 273 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 ENDOD1O94919 500 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 ALPIP09923 528 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 KCNJ3P48549 501 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 OVCH1Q7RTY7 1134 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 ST7LQ8TDW4 575 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 DCLRE1CQ96SD1 692 aaKnown RBP6.77□□□□□ -1.33
VPS53-204ENST00000437048 C12orf57Q99622 126 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 ERVK-21P61565 698 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 SPNS2Q8IVW8 549 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 OR6N2Q8NGY6 317 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 PIGQQ9BRB3 760 aa6.77□□□□□ -1.33
VPS53-204ENST00000437048 M0R3H8 397 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 IL5P05113 134 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 ELAVL3Q14576 367 aaKnown RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 UBTD2Q8WUN7 234 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 ALOXE3Q9BYJ1 711 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 OR10A5Q9H207 317 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 OR10A2Q9H208 303 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 ZNF442Q9H7R0 627 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 MYEF2Q9P2K5 600 aaKnown RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 GALPQ9UBC7 116 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 KLF15Q9UIH9 416 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 SALL4Q9UJQ4 1053 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 ZNF254O75437 659 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 CLEC3AO75596 197 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 TAS2R38P59533 333 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 FAM160A2Q8N612 972 aaPredicted RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 ATG10Q9H0Y0 220 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 BACE2Q9Y5Z0 518 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 CASP9P55211 416 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 LRRC73Q5JTD7 316 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 FAM69BQ5VUD6 431 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 SBSNQ6UWP8 590 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 MEPCEQ7L2J0 689 aaKnown RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 TCTEX1D1Q8N7M0 179 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 C12orf29Q8N999 325 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 GIMAP1Q8WWP7 306 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 MIB2Q96AX9 1013 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 GPR20Q99678 358 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 VCX2Q9H322 139 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 TRAV18A0A075B6X5 111 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 OR5K3A6NET4 321 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 FZD7O75084 574 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 ASCL1P50553 236 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 ZNF157P51786 506 aaPredicted RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 TAS2R45P59539 299 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 LRRC32Q14392 662 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 PLGLAQ15195 96 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 GKN2Q86XP6 184 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 PSMG2Q969U7 264 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 ECHDC3Q96DC8 303 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 ZBTB45Q96K62 511 aaPredicted RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 IGLV3-22A0A075B6J6 115 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 YIF1AO95070 293 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 NSA2O95478 260 aaKnown RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 GNSP15586 552 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 RAB28P51157 221 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 MAXP61244 160 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 SUMO1P63165 101 aaKnown RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 GPLD1P80108 840 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 FAM110CQ1W6H9 321 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 SIGIRRQ6IA17 410 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 NDUFB11Q9NX14 153 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 RAB22AQ9UL26 194 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 B4DXG7 233 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 OR2C1O95371 312 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 MT-CYBP00156 380 aaPredicted RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 G0S2P27469 103 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 EFNA3P52797 238 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms