RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ARHGAP9Q9BRR9 750 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 PRR14Q9BWN1 585 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 ADAP2Q9NPF8 381 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 HRASLS2Q9NWW9 162 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 ZNF223Q9UK11 482 aaPredicted RBP13.67□□□□□ -0.22
USP4-203ENST00000415188 ATXN7L1Q9ULK2 861 aaPredicted RBP13.67□□□□□ -0.22
USP4-203ENST00000415188 SLC7A7Q9UM01 511 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 MGAQ8IWI9 3026 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 OR5K3A6NET4 321 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 CDRT15L2A8MXV6 281 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 FGF17O60258 216 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 NKX2-2O95096 273 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 SLC35E2P0CK97 266 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 LIMS3P0CW19 117 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 LIMS4P0CW20 117 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 GLB1P16278 677 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 GALP22466 123 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 TNFSF8P32971 234 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 GPR4P46093 362 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 MAZP56270 477 aaKnown RBP13.67□□□□□ -0.22
USP4-203ENST00000415188 PSPHP78330 225 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 BDH1Q02338 343 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 GPR68Q15743 365 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 TRMT12Q53H54 448 aaKnown RBP13.67□□□□□ -0.22
USP4-203ENST00000415188 ZNF613Q6PF04 617 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 CD200R1LQ6Q8B3 271 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 TMPRSS11AQ6ZMR5 421 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 KLHL36Q8N4N3 616 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 ZNF485Q8NCK3 441 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 FAM83FQ8NEG4 500 aaPredicted RBP13.67□□□□□ -0.22
USP4-203ENST00000415188 OR6C4Q8NGE1 309 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 OR52L1Q8NGH7 329 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 ADAMTS18Q8TE60 1221 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 TMEM255BQ8WV15 326 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 AP3S1Q92572 193 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 LIN37Q96GY3 246 aaPredicted RBP13.67□□□□□ -0.22
USP4-203ENST00000415188 KCNS3Q9BQ31 491 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 PRSS27Q9BQR3 290 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 SEMA6CQ9H3T2 930 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 SNTG1Q9NSN8 517 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 IRAK4Q9NWZ3 460 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 QPCTLQ9NXS2 382 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 H2AFY2Q9P0M6 372 aaPredicted RBP13.67□□□□□ -0.22
USP4-203ENST00000415188 LRIT1Q9P2V4 623 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 POMT2Q9UKY4 750 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 SF3B6Q9Y3B4 125 aaKnown RBP13.67□□□□□ -0.22
USP4-203ENST00000415188 CMAHPQ9Y471 501 aa13.67□□□□□ -0.22
USP4-203ENST00000415188 TRDV1A0A1B0GX56 115 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 CDHR4A6H8M9 788 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 CTDSP2O14595 271 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 AKAP8O43823 692 aaKnown RBP13.66□□□□□ -0.22
USP4-203ENST00000415188 RCBTB2O95199 551 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 LYPD3O95274 346 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 DLGAP3O95886 979 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 EIF2S1P05198 315 aaKnown RBP13.66□□□□□ -0.22
USP4-203ENST00000415188 SLC1A3P43003 542 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 SNRPNP63162 240 aaKnown RBP13.66□□□□□ -0.22
USP4-203ENST00000415188 MGAT2Q10469 447 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 MAP4K2Q12851 820 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 OR1Q1Q15612 314 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 CLEC12AQ5QGZ9 265 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 MRPL2Q5T653 305 aaKnown RBP13.66□□□□□ -0.22
USP4-203ENST00000415188 ARHGAP40Q5TG30 622 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 SLC30A6Q6NXT4 461 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 RAB11FIP2Q7L804 512 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 TMPRSS9Q7Z410 1059 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 CDK20Q8IZL9 346 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 ARL14Q8N4G2 192 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 SLC37A2Q8TED4 501 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 SLC39A7Q92504 469 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 KIAA1143Q96AT1 154 aaPredicted RBP13.66□□□□□ -0.22
USP4-203ENST00000415188 TRMT61AQ96FX7 289 aaKnown RBP13.66□□□□□ -0.22
USP4-203ENST00000415188 TXNDC15Q96J42 360 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 BARHL1Q9BZE3 327 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 ASB6Q9NWX5 421 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 BAIAP2Q9UQB8 552 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 NTNG1Q9Y2I2 539 aa13.66□□□□□ -0.22
USP4-203ENST00000415188 MRPS2Q9Y399 296 aaKnown RBP13.66□□□□□ -0.22
USP4-203ENST00000415188 ZNF860A6NHJ4 632 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 TTC36A6NLP5 189 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 PLD2O14939 933 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 ATXN7O15265 892 aaPredicted RBP13.65□□□□□ -0.22
USP4-203ENST00000415188 PIP5K1CO60331 668 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 CDRT1O95170 752 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 PVRP15151 417 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 GTF2E2P29084 291 aaKnown RBP13.65□□□□□ -0.22
USP4-203ENST00000415188 CAPZA2P47755 286 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 GCGRP47871 477 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 CTBP2P56545 445 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 TMPRSS3P57727 454 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 HOXC5Q00444 222 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 CBX3Q13185 183 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 GPR50Q13585 617 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 PCSK4Q6UW60 755 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 TMPRSS11FQ6ZWK6 438 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 GRAMD2AQ8IUY3 354 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 GALNT12Q8IXK2 581 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 FANK1Q8TC84 345 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 GPR151Q8TDV0 419 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 ZDHHC1Q8WTX9 485 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms