RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	NSMCE2	Q96MF7	247 aa		11.91	□□□□□ -0.5
SF1-206	ENST00000413725	ARHGDIG	Q99819	225 aa		11.91	□□□□□ -0.5
SF1-206	ENST00000413725	KLHDC3	Q9BQ90	382 aa		11.91	□□□□□ -0.5
SF1-206	ENST00000413725	ACER3	Q9NUN7	267 aa		11.91	□□□□□ -0.5
SF1-206	ENST00000413725	SPRR3	Q9UBC9	169 aa		11.91	□□□□□ -0.5
SF1-206	ENST00000413725	ACAD8	Q9UKU7	415 aa		11.91	□□□□□ -0.5
SF1-206	ENST00000413725	SAMD4A	Q9UPU9	718 aa	Known RBP	11.91	□□□□□ -0.5
SF1-206	ENST00000413725	SHISA8	B8ZZ34	492 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	NPIPA2	E9PIF3	369 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	NPIPA3	F8WFD2	350 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725		H3BML4	177 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725		M0R3H8	397 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	ETV2	O00321	342 aa	Predicted RBP	11.9	□□□□□ -0.5
SF1-206	ENST00000413725	ADAM11	O75078	769 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	WISP2	O76076	250 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	EPPIN	O95925	133 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	PEPD	P12955	493 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	PRG2	P13727	222 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	BMP7	P18075	431 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	POU3F2	P20265	443 aa	Predicted RBP	11.9	□□□□□ -0.5
SF1-206	ENST00000413725	ACAA2	P42765	397 aa	Known RBP	11.9	□□□□□ -0.5
SF1-206	ENST00000413725	SLC1A3	P43003	542 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	HTR3A	P46098	478 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	CASP6	P55212	293 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	GFRA1	P56159	465 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	FOXK1	P85037	733 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	CRYZ	Q08257	329 aa	Known RBP	11.9	□□□□□ -0.5
SF1-206	ENST00000413725	MERTK	Q12866	999 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	TRIM25	Q14258	630 aa	Known RBP	11.9	□□□□□ -0.5
SF1-206	ENST00000413725	NRF1	Q16656	503 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	11.9	□□□□□ -0.5
SF1-206	ENST00000413725	MTX3	Q5HYI7	312 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	WLS	Q5T9L3	541 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	VASN	Q6EMK4	673 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	WBP2NL	Q6ICG8	309 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	COMTD1	Q86VU5	262 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	CARM1	Q86X55	608 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	OR52E4	Q8NGH9	312 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	OR5M1	Q8NGP8	315 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	VANGL1	Q8TAA9	524 aa	Predicted RBP	11.9	□□□□□ -0.5
SF1-206	ENST00000413725	CCDC124	Q96CT7	223 aa	Known RBP	11.9	□□□□□ -0.5
SF1-206	ENST00000413725	ASB9	Q96DX5	294 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	CLPTM1L	Q96KA5	538 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	ZNF559	Q9BR84	538 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	RSPO3	Q9BXY4	272 aa	Predicted RBP	11.9	□□□□□ -0.5
SF1-206	ENST00000413725	UGT2B28	Q9BY64	529 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	TRIM2	Q9C040	744 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	PCDHAC1	Q9H158	963 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	LRMDA	Q9H2I8	198 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	SERINC1	Q9NRX5	453 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	ACTR3B	Q9P1U1	418 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	RPS6KB2	Q9UBS0	482 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	SH3GLB1	Q9Y371	365 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	AP4B1	Q9Y6B7	739 aa		11.9	□□□□□ -0.5
SF1-206	ENST00000413725	PRRG2	O14669	202 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	GSC2	O15499	205 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	FMO6P	O60774	539 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	SLC19A2	O60779	497 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	NTN1	O95631	604 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	TPO	P07202	933 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	APOBEC1	P41238	236 aa	Known RBP	11.89	□□□□□ -0.51
SF1-206	ENST00000413725	POLR2H	P52434	150 aa	Known RBP	11.89	□□□□□ -0.51
SF1-206	ENST00000413725	ZNF136	P52737	540 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	DLX5	P56178	289 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	HOXC5	Q00444	222 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	SELENBP1	Q13228	472 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	IGFBP7	Q16270	282 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	IFI44L	Q53G44	452 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	C3orf33	Q6P1S2	294 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	PLEKHM3	Q6ZWE6	761 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	FKBP9P1	Q75LS8	142 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	DHFR2	Q86XF0	187 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	PM20D2	Q8IYS1	436 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	ULK2	Q8IYT8	1036 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	FAM57A	Q8TBR7	257 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	POC1B	Q8TC44	478 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	GEMIN6	Q8WXD5	167 aa	Known RBP	11.89	□□□□□ -0.51
SF1-206	ENST00000413725	SMPDL3B	Q92485	455 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	LRGUK	Q96M69	825 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	MCHR1	Q99705	422 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	TIMP4	Q99727	224 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	CADM1	Q9BY67	442 aa	Known RBP	11.89	□□□□□ -0.51
SF1-206	ENST00000413725	TRIM15	Q9C019	465 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	MMADHC	Q9H3L0	296 aa	Predicted RBP	11.89	□□□□□ -0.51
SF1-206	ENST00000413725	TMEM27	Q9HBJ8	222 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	DCAF13	Q9NV06	445 aa	Known RBP	11.89	□□□□□ -0.51
SF1-206	ENST00000413725	SELENON	Q9NZV5	590 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	ZNF337	Q9Y3M9	751 aa		11.89	□□□□□ -0.51
SF1-206	ENST00000413725	SPIN1	Q9Y657	262 aa	Predicted RBP	11.89	□□□□□ -0.51
SF1-206	ENST00000413725	GJE1	A6NN92	205 aa		11.88	□□□□□ -0.51
SF1-206	ENST00000413725	PSMA4	P25789	261 aa	Known RBP	11.88	□□□□□ -0.51
SF1-206	ENST00000413725	RAC1	P63000	192 aa		11.88	□□□□□ -0.51
SF1-206	ENST00000413725	KCNC4	Q03721	635 aa		11.88	□□□□□ -0.51
SF1-206	ENST00000413725	TRAP1	Q12931	704 aa	Known RBP	11.88	□□□□□ -0.51
SF1-206	ENST00000413725	MRPL49	Q13405	166 aa	Known RBP	11.88	□□□□□ -0.51
SF1-206	ENST00000413725	SF3B4	Q15427	424 aa	Known RBP eCLIP	11.88	□□□□□ -0.51	4e-8	■■■□□ 14.9
SF1-206	ENST00000413725	BCL2A1	Q16548	175 aa		11.88	□□□□□ -0.51
SF1-206	ENST00000413725	LCN8	Q6JVE9	175 aa		11.88	□□□□□ -0.51
SF1-206	ENST00000413725	PGM2L1	Q6PCE3	622 aa		11.88	□□□□□ -0.51
SF1-206	ENST00000413725	POMZP3	Q6PJE2	187 aa		11.88	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms