RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 EXOSC3Q9NQT5 275 aaKnown RBP12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 THUMPD1Q9NXG2 353 aaKnown RBP12.99□□□□□ -0.33
NIF3L1-205ENST00000409588 MAP1AP78559 2803 aaPredicted RBP12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 KIAA0513O60268 411 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 SLC22A3O75751 556 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 ATE1O95260 518 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 OPN1LWP04000 364 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 ALDOCP09972 364 aaKnown RBP12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 CD99P14209 185 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 PSMB1P20618 241 aaKnown RBP12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 SFTPDP35247 375 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 HTR3AP46098 478 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 UFM1P61960 85 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 CSNK2A1P68400 391 aaPredicted RBP12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 P2RY6Q15077 328 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 ZSWIM7Q19AV6 140 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 TIGD2Q4W5G0 525 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 PDCD4Q53EL6 469 aaKnown RBP12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 TYW3Q6IPR3 259 aaKnown RBP12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 LIAT1Q6ZQX7 453 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 ZNF621Q6ZSS3 439 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 MSANTD1Q6ZTZ1 278 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 FCRLAQ7L513 359 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 ZNF619Q8N2I2 560 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 TMCO5AQ8N6Q1 288 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 FAM71CQ8NEG0 241 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 STEAP2Q8NFT2 490 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 NPAS1Q99742 590 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 KLHL4Q9C0H6 718 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 TMEM185BQ9H7F4 350 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 RMND5AQ9H871 391 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 ACER3Q9NUN7 267 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 KLHL28Q9NXS3 571 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 ZIM2Q9NZV7 527 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 KLHL9Q9P2J3 617 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 KLHL13Q9P2N7 655 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 KCNE5Q9UJ90 142 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 PLEKHA6Q9Y2H5 1048 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 ITPR3Q14573 2671 aa12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 TEP1Q99973 2627 aaKnown RBP12.98□□□□□ -0.33
NIF3L1-205ENST00000409588 NPIPA5A0A0B4J1W7 369 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 NPIPA7E9PJI5 369 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 HMGN4O00479 90 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 DNPH1O43598 174 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 TMCC2O75069 709 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 TGDSO95455 350 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 CNOT4O95628 575 aaKnown RBP12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 ZCCHC18P0CG32 403 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 NPIPA8P0DM63 369 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 EPHA3P29320 983 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 AGTR1P30556 359 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 PGM1P36871 562 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 NR1H2P55055 460 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 SESN3P58005 492 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 IRX1P78414 480 aaPredicted RBP12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 PRR20EP86478 221 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 PRR20CP86479 221 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 PRR20DP86480 221 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 PRR20BP86481 221 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 PRR20AP86496 221 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 TOMM34Q15785 309 aaPredicted RBP12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 GPAT3Q53EU6 434 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 AGBL2Q5U5Z8 902 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 STAC2Q6ZMT1 411 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 LRRC74BQ6ZQY2 392 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 RFWD2Q8NHY2 731 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 WDR55Q9H6Y2 383 aaPredicted RBP12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 BCO1Q9HAY6 547 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 NGBQ9NPG2 151 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 SDR39U1Q9NRG7 319 aaPredicted RBP12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 CALML5Q9NZT1 146 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 ABCA4P78363 2273 aa12.97□□□□□ -0.33
NIF3L1-205ENST00000409588 ZNF724A8MTY0 619 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 DEFB108AA8MXU0 73 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 RFXANKO14593 260 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 UBDO15205 165 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 ARHGEF9O43307 516 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 OIP5O43482 229 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 CYP7B1O75881 506 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 UBTFL6P0CB48 400 aaPredicted RBP12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 UQCRBP14927 111 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 ENPP1P22413 925 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 CCR4P51679 360 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 PDK3Q15120 406 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 EXOC3L2Q2M3D2 409 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 BEX5Q5H9J7 111 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 NXNQ6DKJ4 435 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 TNFAIP8L2Q6P589 184 aaPredicted RBP12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 FRRS1Q6ZNA5 592 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 C20orf204Q6ZNR8 217 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 TMPPEQ6ZT21 453 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 GRINAQ7Z429 371 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 LRRC75A-AS1Q8N1F1 130 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 CLEC4FQ8N1N0 589 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 ARFGAP2Q8N6H7 521 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 ZNF563Q8TA94 476 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 MGARPQ8TDB4 240 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 ROBO4Q8WZ75 1007 aa12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 ZNF75CPQ92670 426 aaPredicted RBP12.96□□□□□ -0.33
NIF3L1-205ENST00000409588 RAB8BQ92930 207 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms