RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 RAD1O60671 282 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 CHRM4P08173 479 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 ITGAMP11215 1152 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 HOXA1P49639 335 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 ARSDP51689 593 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 PIN1Q13526 163 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 UBL7Q96S82 380 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 PCDHGA7Q9Y5G6 932 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 A8MVM7 634 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC43A1O75387 559 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 CA5AP35218 305 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 TNFRSF4P43489 277 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 VASPP50552 380 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 DCAF7P61962 342 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC14A1Q13336 389 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 CHST14Q8NCH0 376 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF296Q8WUU4 475 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 BPIFA2Q96DR5 249 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 ZFAND5O76080 213 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 CAPNS1P04632 268 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 ICAM2P13598 275 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 IL2RGP31785 369 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 LETMD1Q6P1Q0 360 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 MEPCEQ7L2J0 689 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 NOXA1Q86UR1 476 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 PIGCQ92535 297 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 ISG20Q96AZ6 181 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 GPATCH2Q9NW75 528 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 TGM6O95932 706 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 RPL35P42766 123 aaKnown RBP12□□□□□ -0.49
CCDC88C-204ENST00000389857 CYB561A3Q8NBI2 242 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 OR7G3Q8NG95 312 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 OR1J2Q8NGS2 313 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC38A1Q9H2H9 487 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 EGLN3Q9H6Z9 239 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 FGF4P08620 206 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 RPS18P62269 152 aaKnown RBP12□□□□□ -0.49
CCDC88C-204ENST00000389857 C2orf76Q3KRA6 126 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 ACOT4Q8N9L9 421 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 B3GNT7Q8NFL0 401 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 PCYT2Q99447 389 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 RTP3Q9BQQ7 232 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 CD300AQ9UGN4 299 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 ENPP5Q9UJA9 477 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 MYH13Q9UKX3 1938 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 TIMP1P01033 207 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF765Q7L2R6 523 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC19A3Q9BZV2 496 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 METTL9Q9H1A3 318 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 GDE1Q9NZC3 331 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 LTBP3Q9NS15 1303 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 NSG1A0A0A6YYJ2 146 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 hCG_1809904A0A1W2PP81 198 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 A0A1W2PPE2 198 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 A0A1W2PR64 198 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 A0A1W2PRV1 198 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 XCR1P46094 333 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF684Q5T5D7 378 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 WDTC1Q8N5D0 677 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 DMBX1Q8NFW5 382 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 TCTN2Q96GX1 697 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 ANKRD60Q9BZ19 345 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC6A20Q9NP91 592 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 DCAF13Q9NV06 445 aaKnown RBP12□□□□□ -0.49
CCDC88C-204ENST00000389857 EHFQ9NZC4 300 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 PCYT1BQ9Y5K3 369 aaPredicted RBP12□□□□□ -0.49
CCDC88C-204ENST00000389857 WIF1Q9Y5W5 379 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 AKAP12Q02952 1782 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 MEIS3P1A6NDR6 274 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 NME4O00746 187 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 SURF4O15260 269 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 FBXO45P0C2W1 286 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 EEF1A2Q05639 463 aaKnown RBP12□□□□□ -0.49
CCDC88C-204ENST00000389857 CATR1Q13166 79 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 FAM180BQ6P0A1 224 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 NAA40Q86UY6 237 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 MCATQ8IVS2 390 aaKnown RBP12□□□□□ -0.49
CCDC88C-204ENST00000389857 FAM174AQ8TBP5 190 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 ADAMTS14Q8WXS8 1223 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 ANKRD9Q96BM1 317 aaPredicted RBP12□□□□□ -0.49
CCDC88C-204ENST00000389857 PRAMEF27A3QJZ7 478 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 GPR18Q14330 331 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 HABP2Q14520 560 aaPredicted RBP12□□□□□ -0.49
CCDC88C-204ENST00000389857 RTP2Q5QGT7 225 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 PRAMEF9Q5VWM5 478 aa12□□□□□ -0.49
CCDC88C-204ENST00000389857 METAP1DQ6UB28 335 aaPredicted RBP12□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF300Q96RE9 604 aaPredicted RBP12□□□□□ -0.49
CCDC88C-204ENST00000389857 ANTXRLA6NF34 631 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 GABARAPH6UMI1 98 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 AGPAT2O15120 278 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 HPGDSO60760 199 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 GABARAPO95166 117 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 RAB40ALP0C0E4 278 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 CRHBPP24387 322 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 RPS5P46782 204 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 CXCR4P61073 352 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 SOX4Q06945 474 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 MFGE8Q08431 387 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 ARL16Q0P5N6 197 aa11.99□□□□□ -0.49
CCDC88C-204ENST00000389857 IRF4Q15306 451 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms