RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 ICAM5Q9UMF0 924 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 HTR3EA5X5Y0 456 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 FAM86C2PA6NEL3 165 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 CSO75390 466 aaKnown RBP23.12■■□□□ 1.29
SHOX2-201ENST00000389589 PPM1BO75688 479 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 SCG5P05408 212 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 NGFRP08138 427 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 UGT2B10P36537 528 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 SERPINB10P48595 397 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 CRYZQ08257 329 aaKnown RBP23.12■■□□□ 1.29
SHOX2-201ENST00000389589 CD226Q15762 336 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 TIMM50Q3ZCQ8 353 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 C19orf48Q6RUI8 117 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 OVCH1Q7RTY7 1134 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 ZNF441Q8N8Z8 693 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 DYNC2LI1Q8TCX1 351 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 ZHX1-C8orf76Q96EF9 292 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 GTPBP2Q9BX10 602 aaKnown RBP23.12■■□□□ 1.29
SHOX2-201ENST00000389589 TSPAN2O60636 221 aa23.11■■□□□ 1.29
SHOX2-201ENST00000389589 TUBA1BP68363 451 aa23.11■■□□□ 1.29
SHOX2-201ENST00000389589 TRA2AQ13595 282 aaKnown RBP eCLIP23.11■■□□□ 1.29
SHOX2-201ENST00000389589 TSTQ16762 297 aaKnown RBP23.11■■□□□ 1.29
SHOX2-201ENST00000389589 ZNF528Q3MIS6 628 aa23.11■■□□□ 1.29
SHOX2-201ENST00000389589 RTL4Q6ZR62 310 aa23.11■■□□□ 1.29
SHOX2-201ENST00000389589 LINC00299Q6ZSB3 139 aa23.11■■□□□ 1.29
SHOX2-201ENST00000389589 SHISA6Q6ZSJ9 500 aa23.11■■□□□ 1.29
SHOX2-201ENST00000389589 TUBA1AQ71U36 451 aa23.11■■□□□ 1.29
SHOX2-201ENST00000389589 GID4Q8IVV7 300 aa23.11■■□□□ 1.29
SHOX2-201ENST00000389589 CACTIN-AS1Q8N1I8 211 aa23.11■■□□□ 1.29
SHOX2-201ENST00000389589 GATSQ8NAP1 163 aa23.11■■□□□ 1.29
SHOX2-201ENST00000389589 C3orf49Q96BT1 292 aa23.11■■□□□ 1.29
SHOX2-201ENST00000389589 IFT27Q9BW83 186 aa23.11■■□□□ 1.29
SHOX2-201ENST00000389589 SLC19A3Q9BZV2 496 aa23.11■■□□□ 1.29
SHOX2-201ENST00000389589 EXOSC1Q9Y3B2 195 aaKnown RBP23.11■■□□□ 1.29
SHOX2-201ENST00000389589 IDSB3KWA1 339 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 ENDOUP21128 410 aaKnown RBP23.1■■□□□ 1.29
SHOX2-201ENST00000389589 HTR1FP30939 366 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 PLCXD2Q0VAA5 305 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 ZNF385CQ66K41 422 aaPredicted RBP23.1■■□□□ 1.29
SHOX2-201ENST00000389589 FAAH2Q6GMR7 532 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 CXXC5Q7LFL8 322 aaKnown RBP23.1■■□□□ 1.29
SHOX2-201ENST00000389589 ANKRD37Q7Z713 158 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 SLCO6A1Q86UG4 719 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 PRR22Q8IZ63 422 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 OPALINQ96PE5 141 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 TAPBPLQ9BX59 468 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 NRSN2Q9GZP1 204 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 PLGRKTQ9HBL7 147 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 NTN3O00634 580 aaPredicted RBP23.1■■□□□ 1.29
SHOX2-201ENST00000389589 PNMTP11086 282 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 PNLIPRP2P54317 469 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 IL11RAQ14626 422 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 APOOLQ6UXV4 268 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 METTL21AQ8WXB1 218 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 SGTBQ96EQ0 304 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 LAT2Q9GZY6 243 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 HINT3Q9NQE9 182 aaKnown RBP23.1■■□□□ 1.29
SHOX2-201ENST00000389589 PCDHGA3Q9Y5H0 932 aa23.1■■□□□ 1.29
SHOX2-201ENST00000389589 TRAV27A0A087WT01 109 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 A0A1W2PQD3 144 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 D6RAR5 112 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 AGRPO00253 132 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 ICOSLGO75144 302 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 ALOX12BO75342 701 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 SLC2A10O95528 541 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 FGF5P12034 268 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 SLC6A6P31641 620 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 SLC6A8P48029 635 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 SLC9A3P48764 834 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 THSD4Q6ZMP0 1018 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 CPOQ8IVL8 374 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 OR51A7Q8NH64 312 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 RNF31Q96EP0 1072 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 PHOX2BQ99453 314 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 SEMA4CQ9C0C4 833 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 ENKD1Q9H0I2 346 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 CMC2Q9NRP2 79 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 CARD8Q9Y2G2 431 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 TMEM129A0AVI4 362 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 VSTM2BA6NLU5 285 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 FOXD2O60548 495 aaPredicted RBP23.09■■□□□ 1.29
SHOX2-201ENST00000389589 FOXK2Q01167 660 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 MLLT11Q13015 90 aaPredicted RBP23.09■■□□□ 1.29
SHOX2-201ENST00000389589 USP43Q70EL4 1123 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 TMCO5AQ8N6Q1 288 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 ZBTB44Q8NCP5 570 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 TP53INP1Q96A56 240 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 OMA1Q96E52 524 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 OCIAD1Q9NX40 245 aa23.09■■□□□ 1.29
SHOX2-201ENST00000389589 CDC14CA4D256 554 aa23.08■■□□□ 1.29
SHOX2-201ENST00000389589 SAGE2PA6NJ88 616 aa23.08■■□□□ 1.29
SHOX2-201ENST00000389589 IGF2P01344 180 aa23.08■■□□□ 1.29
SHOX2-201ENST00000389589 ETV5P41161 510 aa23.08■■□□□ 1.29
SHOX2-201ENST00000389589 ENTPD1P49961 510 aa23.08■■□□□ 1.29
SHOX2-201ENST00000389589 ETV1P50549 477 aa23.08■■□□□ 1.29
SHOX2-201ENST00000389589 TNFRSF13CQ96RJ3 184 aa23.08■■□□□ 1.29
SHOX2-201ENST00000389589 DCSTAMPQ9H295 470 aa23.08■■□□□ 1.29
SHOX2-201ENST00000389589 EXOGQ9Y2C4 368 aaKnown RBP23.08■■□□□ 1.29
SHOX2-201ENST00000389589 ELOA3DA6NLF2 546 aaPredicted RBP23.07■■□□□ 1.28
SHOX2-201ENST00000389589 OIP5O43482 229 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms