RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 HPCAP84074 193 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 AQP6Q13520 282 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 SPCS2Q15005 226 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 ZNF311Q5JNZ3 666 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 UBE2UQ5VVX9 321 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 TMEM236Q5W0B7 351 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 HLA-DQA1Q5Y7H0 255 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 HEPHL1Q6MZM0 1159 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 CDC73Q6P1J9 531 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 PODNL1Q6PEZ8 512 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 DGAT2L6Q6ZPD8 337 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 ZADH2Q8N4Q0 377 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 LINC00471Q8N535 108 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 FCGR1BQ92637 280 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 GGHQ92820 318 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 HSPBAP1Q96EW2 488 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 CRELD1Q96HD1 420 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 NUDT9Q9BW91 350 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 AMBNQ9NP70 447 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 MAN2C1Q9NTJ4 1040 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 ZNF223Q9UK11 482 aaPredicted RBP9.36□□□□□ -0.91
VPS53-202ENST00000389040 SLC13A4Q9UKG4 626 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 LOC400499M0QZD8 3231 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 DSPP15924 2871 aaKnown RBP9.36□□□□□ -0.91
VPS53-202ENST00000389040 PKD1L2Q7Z442 2459 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 SH3D21A4FU49 640 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 M0R129 80 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 NME6O75414 186 aaPredicted RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 CBX7O95931 251 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 NR4A1P22736 598 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 C21orf33P30042 268 aaPredicted RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 PPICP45877 212 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 TMED10P49755 219 aaKnown RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 EBPQ15125 230 aaKnown RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 TBCEQ15813 527 aaPredicted RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 TRMT12Q53H54 448 aaKnown RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 FHL5Q5TD97 284 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 OPN5Q6U736 354 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 PTCHD4Q6ZW05 846 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 WDR53Q7Z5U6 358 aaPredicted RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 P2RY8Q86VZ1 359 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 SLC16A11Q8NCK7 471 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 C16orf52Q8NHV5 167 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 TBC1D15Q8TC07 691 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 SLC22A8Q8TCC7 542 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 HOXB13Q92826 284 aaPredicted RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 SLC35A4Q96G79 324 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 SGCZQ96LD1 299 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 ARHGDIGQ99819 225 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 TMUB1Q9BVT8 246 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 WWTR1Q9GZV5 400 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 POLR2J3Q9H1A7 115 aaKnown RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 NPDC1Q9NQX5 325 aaPredicted RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 USP24Q9UPU5 2620 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 NINQ8N4C6 2090 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 A0A1B0GVG6 124 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 TMEM200CA6NKL6 621 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 H3BN98 237 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 TO15178 435 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 TPST2O60704 377 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 SOX14O95416 240 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 CLPSP04118 112 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 LCKP06239 509 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 CT62P0C5K7 136 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 FAM87AP0C7U9 286 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 PRKAR1BP31321 381 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 MAP1BP46821 2468 aaKnown RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 CYB561P49447 251 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 EMDP50402 254 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 SSR4P51571 173 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 ZNHIT3Q15649 155 aaPredicted RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 SLX4IPQ5VYV7 408 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 B3GNTL1Q67FW5 361 aaPredicted RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 ASB18Q6ZVZ8 466 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 VRK2Q86Y07 508 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 C9orf40Q8IXQ3 194 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 SIRT6Q8N6T7 355 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 ZNF441Q8N8Z8 693 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 CDRT4Q8N9R6 151 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 OR52R1Q8NGF1 315 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 NR4A3Q92570 626 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 CDS1Q92903 461 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 ADIPOR1Q96A54 375 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 ZG16BQ96DA0 208 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 SECISBP2Q96T21 854 aaKnown RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 UTP23Q9BRU9 249 aaKnown RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 CDCP1Q9H5V8 836 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 CLN6Q9NWW5 311 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 SELENONQ9NZV5 590 aa9.35□□□□□ -0.91
VPS53-202ENST00000389040 MRTO4Q9UKD2 239 aaKnown RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 GPR55Q9Y2T6 319 aaPredicted RBP9.35□□□□□ -0.91
VPS53-202ENST00000389040 EPG5Q9HCE0 2579 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 OR5H15A6NDH6 313 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 FRG2CA6NGY1 282 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 HRKO00198 91 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 SLC22A1O15245 554 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 FCMRO60667 390 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 ITGA10O75578 1167 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 ZIC2O95409 532 aaPredicted RBP9.34□□□□□ -0.91
VPS53-202ENST00000389040 IGFBP1P08833 259 aaPredicted RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms