RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 FAM83FQ8NEG4 500 aaPredicted RBP19.86■□□□□ 0.77
TRIM54-202ENST00000380075 OR4F15Q8NGB8 312 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 PEX11GQ96HA9 241 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 ELF4Q99607 663 aaPredicted RBP19.86■□□□□ 0.77
TRIM54-202ENST00000380075 ZNF649Q9BS31 505 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 ERVMER34-1Q9H9K5 563 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 DNAJB12Q9NXW2 375 aaKnown RBP19.86■□□□□ 0.77
TRIM54-202ENST00000380075 EPHA6Q9UF33 1036 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 CAB39Q9Y376 341 aaPredicted RBP19.86■□□□□ 0.77
TRIM54-202ENST00000380075 J3QRE1 110 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 SLC2A10O95528 541 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 HSD17B7P56937 341 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 CRTC2Q53ET0 693 aaPredicted RBP19.86■□□□□ 0.77
TRIM54-202ENST00000380075 LHFPL3Q86UP9 236 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 BBS1Q8NFJ9 593 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 LMX1AQ8TE12 382 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 AP3S1Q92572 193 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 SECISBP2Q96T21 854 aaKnown RBP19.86■□□□□ 0.77
TRIM54-202ENST00000380075 ATP13A2Q9NQ11 1180 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 POLE4Q9NR33 117 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 INPP5EQ9NRR6 644 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 IL20RAQ9UHF4 553 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 CMAHPQ9Y471 501 aa19.86■□□□□ 0.77
TRIM54-202ENST00000380075 A0A1B0GWA3 101 aa19.85■□□□□ 0.77
TRIM54-202ENST00000380075 SLC22A31A6NKX4 558 aa19.85■□□□□ 0.77
TRIM54-202ENST00000380075 RGS5O15539 181 aa19.85■□□□□ 0.77
TRIM54-202ENST00000380075 SAGP10523 405 aaPredicted RBP19.85■□□□□ 0.77
TRIM54-202ENST00000380075 GTF2E2P29084 291 aaKnown RBP19.85■□□□□ 0.77
TRIM54-202ENST00000380075 MLLT3P42568 568 aaPredicted RBP19.85■□□□□ 0.77
TRIM54-202ENST00000380075 GABRA4P48169 554 aa19.85■□□□□ 0.77
TRIM54-202ENST00000380075 FGFBP1Q14512 234 aa19.85■□□□□ 0.77
TRIM54-202ENST00000380075 SHBQ15464 509 aa19.85■□□□□ 0.77
TRIM54-202ENST00000380075 PRR23CQ6ZRP0 262 aa19.85■□□□□ 0.77
TRIM54-202ENST00000380075 CADM3Q8N126 398 aa19.85■□□□□ 0.77
TRIM54-202ENST00000380075 TMEM203Q969S6 136 aa19.85■□□□□ 0.77
TRIM54-202ENST00000380075 RBCK1Q9BYM8 510 aa19.85■□□□□ 0.77
TRIM54-202ENST00000380075 ASB6Q9NWX5 421 aa19.85■□□□□ 0.77
TRIM54-202ENST00000380075 TMEM131Q92545 1883 aa19.85■□□□□ 0.77
TRIM54-202ENST00000380075 PCDH15Q96QU1 1955 aa19.85■□□□□ 0.77
TRIM54-202ENST00000380075 TLCD2A6NGC4 264 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 NPIPB9F8W1W9 429 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 TGFBR3LH3BV60 316 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 SOCS6O14544 535 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 HLA-DPB1P04440 258 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 ACAA2P42765 397 aaKnown RBP19.84■□□□□ 0.77
TRIM54-202ENST00000380075 GPR3P46089 330 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 SEPHS1P49903 392 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 FUT7Q11130 342 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 GPR50Q13585 617 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 SERTAD2Q14140 314 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 PLBD1Q6P4A8 553 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 ACBD7Q8N6N7 88 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 ZNF614Q8N883 585 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 SETD6Q8TBK2 473 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 OIT3Q8WWZ8 545 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 RAB33BQ9H082 229 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 MEPEQ9NQ76 525 aaPredicted RBP19.84■□□□□ 0.77
TRIM54-202ENST00000380075 RIF1Q5UIP0 2472 aaKnown RBP19.84■□□□□ 0.77
TRIM54-202ENST00000380075 H0YIG0 161 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 GFRA3O60609 400 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 SDC3O75056 442 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 PTP4A3O75365 173 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 APOA1P02647 267 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 MSL3P1P0C860 447 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 SSTR4P31391 388 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 RFX3P48380 749 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 ATP12AP54707 1039 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 FOXK2Q01167 660 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 ZNF322Q6U7Q0 402 aaPredicted RBP19.84■□□□□ 0.77
TRIM54-202ENST00000380075 ASB15Q8WXK1 588 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 IFT27Q9BW83 186 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 PDE7BQ9NP56 450 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 TOR4AQ9NXH8 423 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 FLRT3Q9NZU0 649 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 POLHQ9Y253 713 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 SLC35A3Q9Y2D2 325 aa19.84■□□□□ 0.77
TRIM54-202ENST00000380075 EFCAB7A8K855 629 aa19.83■□□□□ 0.77
TRIM54-202ENST00000380075 PRR23D1E9PI22 279 aaPredicted RBP19.83■□□□□ 0.77
TRIM54-202ENST00000380075 CDX4O14627 284 aaPredicted RBP19.83■□□□□ 0.77
TRIM54-202ENST00000380075 CER1O95813 267 aa19.83■□□□□ 0.77
TRIM54-202ENST00000380075 IGKV1D-16P01601 117 aa19.83■□□□□ 0.77
TRIM54-202ENST00000380075 PRR23D2P0DMB1 279 aaPredicted RBP19.83■□□□□ 0.77
TRIM54-202ENST00000380075 ARRB1P49407 418 aaPredicted RBP19.83■□□□□ 0.77
TRIM54-202ENST00000380075 HNRNPA0Q13151 305 aaKnown RBP19.83■□□□□ 0.77
TRIM54-202ENST00000380075 ZNF267Q14586 743 aaPredicted RBP19.83■□□□□ 0.77
TRIM54-202ENST00000380075 ULK3Q6PHR2 472 aa19.83■□□□□ 0.77
TRIM54-202ENST00000380075 OR13C2Q8NGS9 318 aa19.83■□□□□ 0.77
TRIM54-202ENST00000380075 GRHL3Q8TE85 626 aa19.83■□□□□ 0.77
TRIM54-202ENST00000380075 TMCO6Q96DC7 493 aa19.83■□□□□ 0.77
TRIM54-202ENST00000380075 LRFN5Q96NI6 719 aa19.83■□□□□ 0.77
TRIM54-202ENST00000380075 SDHCQ99643 169 aaPredicted RBP19.83■□□□□ 0.77
TRIM54-202ENST00000380075 PRODH2Q9UF12 536 aa19.83■□□□□ 0.77
TRIM54-202ENST00000380075 CLDN16Q9Y5I7 305 aa19.83■□□□□ 0.77
TRIM54-202ENST00000380075 ADAMTS9Q9P2N4 1935 aa19.83■□□□□ 0.76
TRIM54-202ENST00000380075 A0A1B0GTQ1 180 aa19.83■□□□□ 0.76
TRIM54-202ENST00000380075 FITM1A5D6W6 292 aa19.83■□□□□ 0.76
TRIM54-202ENST00000380075 RIIAD1A6NNX1 92 aa19.83■□□□□ 0.76
TRIM54-202ENST00000380075 GDF9O60383 454 aa19.83■□□□□ 0.76
TRIM54-202ENST00000380075 FABP5Q01469 135 aa19.83■□□□□ 0.76
TRIM54-202ENST00000380075 ALG10BQ5I7T1 473 aa19.83■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms