RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 RAD21L1Q9H4I0 556 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 SPRR3Q9UBC9 169 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 NPIPA1Q9UND3 350 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 ANGPT4Q9Y264 503 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 U3KQV3 271 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 CACNA1CQ13936 2221 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 HECTD1Q9ULT8 2610 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 IGKV1D-42A0A075B6H8 117 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 TRAV17A0A0B4J275 112 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 OR2M5A3KFT3 312 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 FAM47E-STBD1D6RA91 191 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 H3BNH8 94 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 ERVH48-1M5A8F1 160 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 SUV39H1O43463 412 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 TIPRLO75663 272 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 TRAPPC6AO75865 159 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 AK1P00568 194 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 CD46P15529 392 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 GFRA1P56159 465 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 RHDQ02161 417 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 LTBQ06643 244 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 FOXF1Q12946 379 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 GNA13Q14344 377 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 OR1Q1Q15612 314 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 TMEM44Q2T9K0 475 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 RNF220Q5VTB9 566 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 PRAMEF8Q5VWM4 474 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 PRAMEF7Q5VXH5 474 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 SLC30A6Q6NXT4 461 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 ERICH5Q6P6B1 374 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 DHRS4L2Q6PKH6 230 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 PATL1Q86TB9 770 aaKnown RBP3.64□□□□□ -1.83
LIG4-201ENST00000356922 PACS2Q86VP3 889 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 SPATA24Q86W54 205 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 GRAMD2AQ8IUY3 354 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 ATP6V1C2Q8NEY4 427 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 OR1J4Q8NGS1 313 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 B4GALNT2Q8NHY0 566 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 RNF145Q96MT1 663 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 ZNF607Q96SK3 696 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 SECISBP2Q96T21 854 aaKnown RBP3.64□□□□□ -1.83
LIG4-201ENST00000356922 FAM173AQ9BQD7 235 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 CHID1Q9BWS9 393 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 SPATA9Q9BWV2 254 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 LAT2Q9GZY6 243 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 ADAM19Q9H013 955 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 ZDHHC11Q9H8X9 412 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 TIMMDC1Q9NPL8 285 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 MEPEQ9NQ76 525 aaPredicted RBP3.64□□□□□ -1.83
LIG4-201ENST00000356922 POLE3Q9NRF9 147 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 C20orf141Q9NUB4 165 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 THUMPD1Q9NXG2 353 aaKnown RBP3.64□□□□□ -1.83
LIG4-201ENST00000356922 NDE1Q9NXR1 346 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 PPP4R1LQ9P1A2 415 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 NKX1-2Q9UD57 310 aaPredicted RBP3.64□□□□□ -1.83
LIG4-201ENST00000356922 OSGIN1Q9UJX0 560 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 ZNF232Q9UNY5 417 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 AURKCQ9UQB9 309 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 ZNF451Q9Y4E5 1061 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 RTTNQ86VV8 2226 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 SETXQ7Z333 2677 aaKnown RBP3.64□□□□□ -1.83
LIG4-201ENST00000356922 TRBV4-1A0A0J9YWV2 114 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 A0A1B0GWA3 101 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 CFAP73A6NFT4 308 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 TTLL8A6PVC2 850 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 RAMP1O60894 148 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 SERPINB7O75635 380 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 CIB2O75838 187 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 KRT36O76013 467 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 PRKACGP22612 351 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 DPP4P27487 766 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 TACR3P29371 465 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 MAGEA8P43361 318 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 P2RX1P51575 399 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 TDGF1P3P51864 188 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 RPP38P78345 283 aaKnown RBP3.64□□□□□ -1.83
LIG4-201ENST00000356922 TRAP1Q12931 704 aaKnown RBP3.64□□□□□ -1.83
LIG4-201ENST00000356922 DEF8Q6ZN54 512 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 AMIGO2Q86SJ2 522 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 ARHGAP24Q8N264 748 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 CADM2Q8N3J6 435 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 METTL25Q8N6Q8 603 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 LRRC17Q8N6Y2 441 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 FAM98AQ8NCA5 519 aaKnown RBP3.64□□□□□ -1.83
LIG4-201ENST00000356922 OR5W2Q8NH69 310 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 SLC7A13Q8TCU3 470 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 TMEM255BQ8WV15 326 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 PNPLA2Q96AD5 504 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 C3orf49Q96BT1 292 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 TMEM41AQ96HV5 264 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 PINK1Q9BXM7 581 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 ENKD1Q9H0I2 346 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 ARMC7Q9H6L4 198 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 NMNAT1Q9HAN9 279 aaPredicted RBP3.64□□□□□ -1.83
LIG4-201ENST00000356922 IL1RAPQ9NPH3 570 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 ACER3Q9NUN7 267 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 TAS2R10Q9NYW0 307 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 SELENONQ9NZV5 590 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 MAGEL2Q9UJ55 1249 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 C15orf41Q9Y2V0 281 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms