RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ATG2BQ96BY7 2078 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 CARNS1A5YM72 827 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 GATBO75879 557 aaKnown RBP20.73■□□□□ 0.91
TRIM28-202ENST00000341753 HOXD4P09016 255 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-202ENST00000341753 ERGP11308 486 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 CSNK2A2P19784 350 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-202ENST00000341753 HIST1H1TP22492 207 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-202ENST00000341753 PUS10Q3MIT2 529 aaKnown RBP20.73■□□□□ 0.91
TRIM28-202ENST00000341753 FAAP20Q6NZ36 180 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 LINGO2Q7L985 606 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 PXKQ7Z7A4 578 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 GPAT4Q86UL3 456 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 OR56B4Q8NH76 319 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 ZNF671Q8TAW3 534 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 ADAMTS15Q8TE58 950 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 CERS4Q9HA82 394 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 GPR34Q9UPC5 381 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 ZNF443Q9Y2A4 671 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-202ENST00000341753 PRR23D1E9PI22 279 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-202ENST00000341753 BHLHE40O14503 412 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 PRR23D2P0DMB1 279 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-202ENST00000341753 IKZF1Q13422 519 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 OPCMLQ14982 345 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 GPR68Q15743 365 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 TMEM81Q6P7N7 255 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 ZNF836Q6ZNA1 936 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 FGD2Q7Z6J4 655 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 ADGRG3Q86Y34 549 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 SERPINA12Q8IW75 414 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 OR2T4Q8NH00 348 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 LGALS14Q8TCE9 139 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 SFXN5Q8TD22 340 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 ZNF764Q96H86 408 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-202ENST00000341753 ERMAPQ96PL5 475 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-202ENST00000341753 FERD3LQ96RJ6 166 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 ANKRD19PQ9H560 264 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 COPZ2Q9P299 210 aa20.73■□□□□ 0.91
TRIM28-202ENST00000341753 TRAV27A0A087WT01 109 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 ATP6V1G2-DDX39BF2Z307 99 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 NUPL2O15504 423 aaKnown RBP20.72■□□□□ 0.91
TRIM28-202ENST00000341753 TFP02787 698 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 PCCBP05166 539 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 PTHLHP12272 177 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 NAGAP17050 411 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 BMP7P18075 431 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 BMP8BP34820 402 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 WASP42768 502 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 FRRS1Q6ZNA5 592 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 BMP8AQ7Z5Y6 402 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 ZNF784Q8NCA9 323 aaPredicted RBP20.72■□□□□ 0.91
TRIM28-202ENST00000341753 OR11G2Q8NGC1 345 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 OR51A7Q8NH64 312 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 DERL3Q96Q80 235 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 CA10Q9NS85 328 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 SCN3AQ9NY46 2000 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 NPIPA5A0A0B4J1W7 369 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 GRXCR1A8MXD5 290 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 NPIPA7E9PJI5 369 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 PEX14O75381 377 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 PROS1P07225 676 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 NPIPA8P0DM63 369 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 EPXP11678 715 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 ADRB3P13945 408 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 CTRB1P17538 263 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 PRKAR1BP31321 381 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 CTRB2Q6GPI1 263 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 HAVCR2Q8TDQ0 301 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 SMPDL3BQ92485 455 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 MS4A6EQ96DS6 147 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 ELMOD3Q96FG2 381 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 CXorf58Q96LI9 332 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 SFXN2Q96NB2 322 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 CD180Q99467 661 aa20.72■□□□□ 0.91
TRIM28-202ENST00000341753 LINC01553A4QN01 128 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 CLEC3AO75596 197 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 OR5F1O95221 314 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 FGF19O95750 216 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 FOXK2Q01167 660 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 ZNF234Q14588 700 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 HACD4Q5VWC8 232 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 OR51L1Q8NGJ5 315 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 PRSS27Q9BQR3 290 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 WDR26Q9H7D7 661 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 ADGRL4Q9HBW9 690 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 PRDM7Q9NQW5 492 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 SCAMP1O15126 338 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 SC5DO75845 299 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 PRNPP04156 253 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 SBK2P0C263 348 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 CXCL2P19875 107 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 ATP5A1P25705 553 aaKnown RBP20.71■□□□□ 0.91
TRIM28-202ENST00000341753 RAD52P43351 418 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 TRA2BP62995 288 aaKnown RBP20.71■□□□□ 0.91
TRIM28-202ENST00000341753 PITPNAQ00169 270 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 CRMP1Q14194 572 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 FAM78AQ5JUQ0 283 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 TMEM240Q5SV17 173 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 SFRP5Q5T4F7 317 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 SLC25A25Q6KCM7 469 aa20.71■□□□□ 0.91
TRIM28-202ENST00000341753 HS6ST2Q96MM7 605 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms