RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 OCLNQ16625 522 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 PGGHGQ32M88 737 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 DCAF12Q5T6F0 453 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 LINC00114Q6XXX2 140 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 MRGPREQ86SM8 312 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 FAM26EQ8N5C1 309 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 OR2T33Q8NG76 320 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 OR52L1Q8NGH7 329 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 NUBPLQ8TB37 319 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 TMEM163Q8TC26 289 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 C12orf43Q96C57 262 aaKnown RBP12.26□□□□□ -0.45
HMGB1-202ENST00000339872 TEX12Q9BXU0 123 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 PTTG2Q9NZH5 202 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 CNOT2Q9NZN8 540 aaKnown RBP12.26□□□□□ -0.45
HMGB1-202ENST00000339872 PTRH2Q9Y3E5 179 aaKnown RBP12.26□□□□□ -0.45
HMGB1-202ENST00000339872 ENO4A6NNW6 628 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 C17orf51A8MQB3 221 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 ALG1L2C9J202 215 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 WWP2O00308 870 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 HCRTR2O43614 444 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 SCO2O43819 266 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 NOL3O60936 208 aaKnown RBP12.26□□□□□ -0.45
HMGB1-202ENST00000339872 LCKP06239 509 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 EVI2BP34910 448 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 FXYD6P3P58550 94 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 PSPHP78330 225 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 INSM1Q01101 510 aaPredicted RBP12.26□□□□□ -0.45
HMGB1-202ENST00000339872 ZNF91Q05481 1191 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 NCF4Q15080 339 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 SYT14P1Q58G82 188 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 WBP2NLQ6ICG8 309 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 OR5M3Q8NGP4 307 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 ZNF420Q8TAQ5 688 aaPredicted RBP12.26□□□□□ -0.45
HMGB1-202ENST00000339872 BRIX1Q8TDN6 353 aaKnown RBP12.26□□□□□ -0.45
HMGB1-202ENST00000339872 PLEKHA8Q96JA3 519 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 MYCBPQ99417 103 aaPredicted RBP12.26□□□□□ -0.45
HMGB1-202ENST00000339872 NPFFR2Q9Y5X5 522 aa12.26□□□□□ -0.45
HMGB1-202ENST00000339872 WDFY3Q8IZQ1 3526 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 TRAV27A0A087WT01 109 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 A0A087WUJ7 227 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 A0A1W2PQD3 144 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 PMS2P1A4D2B8 440 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 OR6C70A6NIJ9 312 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 ZNF701M0R085 212 aaPredicted RBP12.25□□□□□ -0.45
HMGB1-202ENST00000339872 BMP7P18075 431 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 SLC15A1P46059 708 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 RAB15P59190 212 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 EFNB1P98172 346 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 TBCEQ15813 527 aaPredicted RBP12.25□□□□□ -0.45
HMGB1-202ENST00000339872 MEDAGQ5VYS4 303 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 RAB11FIP2Q7L804 512 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 CACTIN-AS1Q8N1I8 211 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 SUMF1Q8NBK3 374 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 ZNF563Q8TA94 476 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 ZNF582Q96NG8 517 aaPredicted RBP12.25□□□□□ -0.45
HMGB1-202ENST00000339872 LAT2Q9GZY6 243 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 HHATLQ9HCP6 504 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 RPL36Q9Y3U8 105 aaKnown RBP12.25□□□□□ -0.45
HMGB1-202ENST00000339872 ELOA3DA6NLF2 546 aaPredicted RBP12.25□□□□□ -0.45
HMGB1-202ENST00000339872 H3BMQ9 156 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 SURF4O15260 269 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 ZNF354AO60765 605 aaPredicted RBP12.25□□□□□ -0.45
HMGB1-202ENST00000339872 PPM1BO75688 479 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 STK17BO94768 372 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 UMODP07911 640 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 DBTP11182 482 aaKnown RBP12.25□□□□□ -0.45
HMGB1-202ENST00000339872 PIPP12273 146 aaPredicted RBP12.25□□□□□ -0.45
HMGB1-202ENST00000339872 PCSK6P29122 969 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 ELOA3BQ3SY89 546 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 SLC25A30Q5SVS4 291 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 ZNF517Q6ZMY9 492 aaPredicted RBP12.25□□□□□ -0.45
HMGB1-202ENST00000339872 OAFQ86UD1 273 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 CYP4Z2PQ8N1L4 340 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 ELOA3Q8NG57 546 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 OR5L2Q8NGL0 311 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 OR51A7Q8NH64 312 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 FGF11Q92914 225 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 COG8Q96MW5 612 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 DEPDC7Q96QD5 511 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 KLHDC3Q9BQ90 382 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 ENKD1Q9H0I2 346 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 UBQLN3Q9H347 655 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 TAS2R16Q9NYV7 291 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 PISDQ9UG56 409 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.25□□□□□ -0.45
HMGB1-202ENST00000339872 SIGLEC7Q9Y286 467 aa12.25□□□□□ -0.45
HMGB1-202ENST00000339872 ZNF318Q5VUA4 2279 aa12.24□□□□□ -0.45
HMGB1-202ENST00000339872 TMEM200CA6NKL6 621 aa12.24□□□□□ -0.45
HMGB1-202ENST00000339872 C4orf47A7E2U8 309 aa12.24□□□□□ -0.45
HMGB1-202ENST00000339872 HCN1O60741 890 aa12.24□□□□□ -0.45
HMGB1-202ENST00000339872 KLF7O75840 302 aaPredicted RBP12.24□□□□□ -0.45
HMGB1-202ENST00000339872 RCBTB2O95199 551 aa12.24□□□□□ -0.45
HMGB1-202ENST00000339872 ITPKBP27987 946 aa12.24□□□□□ -0.45
HMGB1-202ENST00000339872 PEX19P40855 299 aa12.24□□□□□ -0.45
HMGB1-202ENST00000339872 SLC6A8P48029 635 aa12.24□□□□□ -0.45
HMGB1-202ENST00000339872 FBXW4P57775 412 aa12.24□□□□□ -0.45
HMGB1-202ENST00000339872 E2F1Q01094 437 aa12.24□□□□□ -0.45
HMGB1-202ENST00000339872 ISXQ2M1V0 245 aa12.24□□□□□ -0.45
HMGB1-202ENST00000339872 SYT6Q5T7P8 510 aaPredicted RBP12.24□□□□□ -0.45
HMGB1-202ENST00000339872 PLAG1Q6DJT9 500 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms