RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 RAB25P57735 213 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 RUNX2Q13950 521 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 MOGQ16653 247 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 LIN54Q6MZP7 749 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 SLC25A24Q6NUK1 477 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 ZNF836Q6ZNA1 936 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 MARCH9Q86YJ5 346 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 TMED9Q9BVK6 235 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 WWTR1Q9GZV5 400 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 OCIAD1Q9NX40 245 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 hCG_1807616A0A1W2PRN6 198 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 OR2J2O76002 312 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 GSTT1P30711 240 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 RORCP51449 518 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 POU3F1Q03052 451 aaPredicted RBP9.41□□□□□ -0.9
USP54-201ENST00000339859 ODF4Q2M2E3 257 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 PERM1Q5SV97 790 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 ZNF613Q6PF04 617 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 SLC35F2Q8IXU6 374 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 ZNF566Q969W8 418 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 KLHL15Q96M94 604 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 FAM173AQ9BQD7 235 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 HCAR1Q9BXC0 346 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 KLHL9Q9P2J3 617 aa9.41□□□□□ -0.9
USP54-201ENST00000339859 PLSCR5A0PG75 271 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 DCDC2BA2VCK2 349 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 GRK5P34947 590 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 PNLIPRP2P54317 469 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 PRICKLE2Q7Z3G6 844 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 ELP5Q8TE02 316 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 SLC38A5Q8WUX1 472 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 TRIB1Q96RU8 372 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 LAT2Q9GZY6 243 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 OR10A2Q9H208 303 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 CORINQ9Y5Q5 1042 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 IER3IP1Q9Y5U9 82 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 HSPE1-MOB4S4R3N1 261 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 A0A1W2PPW3 197 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 SPINT1O43278 529 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 PRPH2P23942 346 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 EMP3P54852 163 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 SLC36A2Q495M3 483 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 RHBDD2Q6NTF9 364 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 C3P1Q6ZMU1 363 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 KRT74Q7RTS7 529 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 DTWD1Q8N5C7 304 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 CCDC54Q8NEL0 328 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 APOBEC4Q8WW27 367 aaKnown RBP9.4□□□□□ -0.9
USP54-201ENST00000339859 NINJ1Q92982 152 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 ZBTB8AQ96BR9 441 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 DAPK2Q9UIK4 370 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 LRP3O75074 770 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 CHRM4P08173 479 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 SLC25A25Q6KCM7 469 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 LRFN4Q6PJG9 635 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 VASH2Q86V25 355 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 TMEM38AQ9H6F2 299 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 MARCH7Q9H992 704 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 PROCRQ9UNN8 238 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 ABCG2Q9UNQ0 655 aa9.4□□□□□ -0.9
USP54-201ENST00000339859 A8MVM7 634 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 LINC01387J3KSC0 135 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 B4GAT1O43505 415 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 IDH3BO43837 385 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 TMPRSS11DO60235 418 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 LCATP04180 440 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 ELAVL4P26378 380 aaKnown RBP9.4□□□□□ -0.91
USP54-201ENST00000339859 NUDT6P53370 316 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 TMPRSS3P57727 454 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 UBE2IP63279 158 aaKnown RBP9.4□□□□□ -0.91
USP54-201ENST00000339859 RSPO4Q2I0M5 234 aaPredicted RBP9.4□□□□□ -0.91
USP54-201ENST00000339859 COL28A1Q2UY09 1125 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 TRMT12Q53H54 448 aaKnown RBP9.4□□□□□ -0.91
USP54-201ENST00000339859 ZNF547Q8IVP9 402 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 PAPD5Q8NDF8 572 aaKnown RBP9.4□□□□□ -0.91
USP54-201ENST00000339859 M1APQ8TC57 530 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 TTC9Q92623 222 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 FBXL20Q96IG2 436 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 NRSN2Q9GZP1 204 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 NOP16Q9Y3C1 178 aaKnown RBP9.4□□□□□ -0.91
USP54-201ENST00000339859 CDH10Q9Y6N8 788 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 CAMK2DQ13557 499 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 ISXQ2M1V0 245 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 FBXO42Q6P3S6 717 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 ZNF367Q7RTV3 350 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 B3GALT1Q9Y5Z6 326 aa9.4□□□□□ -0.91
USP54-201ENST00000339859 ZSWIM8A7E2V4 1837 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 MT-ATP6P00846 226 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 ARFRP1Q13795 201 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 ZNF846Q147U1 533 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 ANKDD1AQ495B1 522 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 PWWP2BQ6NUJ5 590 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 SLCO6A1Q86UG4 719 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 MCFD2Q8NI22 146 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 ACTR6Q9GZN1 396 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 PCDHGB6Q9Y5F9 930 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 TSPAN12O95859 305 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 MC2RQ01718 297 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 PLBD1Q6P4A8 553 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 BOLLQ8N9W6 283 aaKnown RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms