RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 PEX11GQ96HA9 241 aa13.74□□□□□ -0.21
TCOF1-201ENST00000323668 SYNPO2LQ9H987 977 aa13.74□□□□□ -0.21
TCOF1-201ENST00000323668 TAS2R3Q9NYW6 316 aa13.74□□□□□ -0.21
TCOF1-201ENST00000323668 DHDHQ9UQ10 334 aa13.74□□□□□ -0.21
TCOF1-201ENST00000323668 CXorf51AA0A1B0GTR3 108 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 AGAP14A8MT82 685 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 CHRM4P08173 479 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 GFOD2Q3B7J2 385 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 PCGF3Q3KNV8 242 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 MFSD12Q6NUT3 480 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 RPL22L1Q6P5R6 122 aaKnown RBP13.73□□□□□ -0.21
TCOF1-201ENST00000323668 FAM111BQ6SJ93 734 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 AVL9Q8NBF6 648 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 GIMAP1Q8WWP7 306 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 HINT3Q9NQE9 182 aaKnown RBP13.73□□□□□ -0.21
TCOF1-201ENST00000323668 NPFFR2Q9Y5X5 522 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 C13orf42A0A1B0GVH6 325 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 A0A1W2PR48 441 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 GATBO75879 557 aaKnown RBP13.73□□□□□ -0.21
TCOF1-201ENST00000323668 VNN2O95498 520 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 IGHA2P01877 340 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 APOC3P02656 99 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 C21orf58P58505 322 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 C12orf73Q69YU5 71 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 ZFAND1Q8TCF1 268 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 DNAJA3Q96EY1 480 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 CST11Q9H112 138 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 FN3KQ9H479 309 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 FGF20Q9NP95 211 aaPredicted RBP13.73□□□□□ -0.21
TCOF1-201ENST00000323668 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.73□□□□□ -0.21
TCOF1-201ENST00000323668 CDHR4A6H8M9 788 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 NPIPA5E9PKD4 350 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 PEX14O75381 377 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 PRSS3P35030 304 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 GZMKP49863 264 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 ERVK-25P63136 954 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 TNFRSF17Q02223 184 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 MAPK14Q16539 360 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 RAB12Q6IQ22 244 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 BEST3Q8N1M1 668 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 OR6F1Q8NGZ6 308 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 TNFRSF13CQ96RJ3 184 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 ARHGAP9Q9BRR9 750 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 MED18Q9BUE0 208 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 METTL17Q9H7H0 456 aaPredicted RBP13.73□□□□□ -0.21
TCOF1-201ENST00000323668 SLC25A19Q9HC21 320 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 NPIPA1Q9UND3 350 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 ENTPD2Q9Y5L3 495 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 NPC1O15118 1278 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 YY2O15391 372 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 TLX3O43711 291 aaPredicted RBP13.73□□□□□ -0.21
TCOF1-201ENST00000323668 ELK1P19419 428 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 CCKBRP32239 447 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 SIRPAP78324 504 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 GPR176Q14439 515 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 ASTLQ6HA08 431 aaPredicted RBP13.73□□□□□ -0.21
TCOF1-201ENST00000323668 KCTD9Q7L273 389 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 TMEM17Q86X19 198 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 ZNF584Q8IVC4 421 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 ORAI3Q9BRQ5 295 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 OR52A5Q9H2C5 316 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 NOX3Q9HBY0 568 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 PRSS16Q9NQE7 514 aa13.73□□□□□ -0.21
TCOF1-201ENST00000323668 NPIPB8E9PQR5 432 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 PSMB1P20618 241 aaKnown RBP13.72□□□□□ -0.21
TCOF1-201ENST00000323668 ACTBP60709 375 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 ACTG1P63261 375 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 C1orf61Q13536 156 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 FAAH2Q6GMR7 532 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 CCSAPQ6IQ19 270 aaPredicted RBP13.72□□□□□ -0.21
TCOF1-201ENST00000323668 SYNPRQ8TBG9 265 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 HAVCR2Q8TDQ0 301 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 FGF13Q92913 245 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 MS4A6EQ96DS6 147 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 EGFP01133 1207 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 OR2T7P0C7T2 308 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 CTGFP29279 349 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 AGTR1P30556 359 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 TSFMP43897 325 aaKnown RBP13.72□□□□□ -0.21
TCOF1-201ENST00000323668 EPHA5P54756 1037 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 ESCO2Q56NI9 601 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 ZNF620Q6ZNG0 422 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 FCRLAQ7L513 359 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 SIAH3Q8IW03 269 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 OR2T27Q8NH04 317 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 ZNF417Q8TAU3 575 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 GPR148Q8TDV2 347 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 PELOQ9BRX2 385 aaKnown RBP13.72□□□□□ -0.21
TCOF1-201ENST00000323668 TMEM185BQ9H7F4 350 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 PRAMEF4O60810 478 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 PRAMEF2O60811 474 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 GDNFP39905 211 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 CLDN2P57739 230 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 ALG10Q5BKT4 473 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 PRAMEF9Q5VWM5 478 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 EIF5AL1Q6IS14 154 aaKnown RBP13.72□□□□□ -0.21
TCOF1-201ENST00000323668 SLC25A24Q6NUK1 477 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 C3P1Q6ZMU1 363 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 OR52R1Q8NGF1 315 aa13.72□□□□□ -0.21
TCOF1-201ENST00000323668 HCFC2Q9Y5Z7 792 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms