RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CYTIPO60759 359 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 LAP3P28838 519 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 PGAP2Q9UHJ9 254 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 DCCP43146 1447 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 CPOXP36551 454 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 P2RX1P51575 399 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 ZNF266Q14584 549 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 EBPQ15125 230 aaKnown RBP13.04□□□□□ -0.32
CSPG4-201ENST00000308508 PHYHD1Q5SRE7 291 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 LARP4Q71RC2 724 aaKnown RBP eCLIP13.04□□□□□ -0.32
CSPG4-201ENST00000308508 MEPCEQ7L2J0 689 aaKnown RBP13.04□□□□□ -0.32
CSPG4-201ENST00000308508 ABHD12BQ7Z5M8 362 aaPredicted RBP13.04□□□□□ -0.32
CSPG4-201ENST00000308508 SLC35F3Q8IY50 421 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 OR2T11Q8NH01 316 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 DIO2Q92813 273 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 WDR92Q96MX6 357 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 CRB3Q9BUF7 120 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 KATNB1Q9BVA0 655 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 SLC39A9Q9NUM3 307 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 RBFOX1Q9NWB1 397 aaKnown RBP13.04□□□□□ -0.32
CSPG4-201ENST00000308508 ZNF337Q9Y3M9 751 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 F6UZH7 168 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 LILRB3O75022 631 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 HAPLN1P10915 354 aaPredicted RBP13.04□□□□□ -0.32
CSPG4-201ENST00000308508 CD53P19397 219 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 CPT2P23786 658 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 NADSYN1Q6IA69 706 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 ZNF322Q6U7Q0 402 aaPredicted RBP13.04□□□□□ -0.32
CSPG4-201ENST00000308508 TECPR1Q7Z6L1 1165 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 UMODL1-AS1Q8N2C9 162 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 IL1F10Q8WWZ1 152 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 MOCOSQ96EN8 888 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 SEMA4GQ9NTN9 838 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 ZNF281Q9Y2X9 895 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 FAM171A2A8MVW0 826 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 HTR3AP46098 478 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 C10orf90Q96M02 699 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 FBXL4Q9UKA2 621 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 SLC35A3Q9Y2D2 325 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 ANKRD34BA5PLL1 514 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 PDGFAP04085 211 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 GKP32189 559 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 AAK1Q2M2I8 961 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 EGLN3Q9H6Z9 239 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 IL26Q9NPH9 171 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 SLC22A11Q9NSA0 550 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 DNAJB11Q9UBS4 358 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 KDM4FA0A1W2PPD8 638 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 PRDX3P30048 256 aaKnown RBP13.04□□□□□ -0.32
CSPG4-201ENST00000308508 B3GLCTQ6Y288 498 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 NRARPQ7Z6K4 114 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 OR5L1Q8NGL2 311 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 SAP130Q9H0E3 1048 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 PELI2Q9HAT8 420 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 SIDT1Q9NXL6 827 aaKnown RBP13.04□□□□□ -0.32
CSPG4-201ENST00000308508 BABAM2Q9NXR7 383 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 LMO7Q8WWI1 1683 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 H0Y8G0 127 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 TEAD2Q15562 447 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 SLC51BQ86UW2 128 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 CDRT4Q8N9R6 151 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 DDX31Q9H8H2 851 aaKnown RBP13.04□□□□□ -0.32
CSPG4-201ENST00000308508 G3V2L1 256 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 GPR17Q13304 367 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 SLC9A3R2Q15599 337 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 TCTE1Q5JU00 501 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 ISCA2Q86U28 154 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 ADGRG5Q8IZF4 528 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 LFNGQ8NES3 379 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 NIT2Q9NQR4 276 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 INSL5Q9Y5Q6 135 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 A0A0U1RQF3 1178 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 TCRBV3S1A0A5B6 114 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 S100A11P31949 105 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 GIPRP48546 466 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 DUSP3P51452 185 aaPredicted RBP13.03□□□□□ -0.32
CSPG4-201ENST00000308508 SUOXP51687 545 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 C1orf87Q8N0U7 546 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 HPSE2Q8WWQ2 592 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 ZNF582Q96NG8 517 aaPredicted RBP13.03□□□□□ -0.32
CSPG4-201ENST00000308508 ZNF623O75123 536 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 GPM6BQ13491 265 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 SERTAD2Q14140 314 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 PLCXD3Q63HM9 321 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 GTF2H5Q6ZYL4 71 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 C14orf80Q86SX3 495 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 APIPQ96GX9 242 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 SERINC2Q96SA4 455 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 RNF32Q9H0A6 362 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 FOLR1P15328 257 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 C18orf63Q68DL7 685 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 CD300LGQ6UXG3 332 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 FJX1Q86VR8 437 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 ANKRD19PQ9H560 264 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 INSL6Q9Y581 213 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 NPIPA7E9PJI5 369 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 NPIPA8P0DM63 369 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 FUT1P19526 365 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 PSMB1P20618 241 aaKnown RBP13.03□□□□□ -0.32
CSPG4-201ENST00000308508 SERPINA2P20848 420 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms