RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 GSTM3P21266 225 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 TBXA2RP21731 343 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 PCYT1AP49585 367 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 SLC26A5P58743 744 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 DOC2BQ14184 412 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 FNDC7Q5VTL7 733 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 ZNF441Q8N8Z8 693 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 BBS1Q8NFJ9 593 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 C3orf49Q96BT1 292 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 NPAS1Q99742 590 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 ANKRD19PQ9H560 264 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 HHATLQ9HCP6 504 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 VCX3AQ9NNX9 186 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 FREM3P0C091 2139 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 AKAP13Q12802 2813 aa15.09■□□□□ 0.01
USP4-201ENST00000265560 COL27A1Q8IZC6 1860 aaPredicted RBP15.08■□□□□ 0.01
USP4-201ENST00000265560 ZC3H12DA2A288 527 aaKnown RBP15.08■□□□□ 0.01
USP4-201ENST00000265560 UNC119BA6NIH7 251 aa15.08■□□□□ 0.01
USP4-201ENST00000265560 SERPINI2O75830 405 aa15.08■□□□□ 0.01
USP4-201ENST00000265560 PSMD4P55036 377 aaKnown RBP15.08■□□□□ 0.01
USP4-201ENST00000265560 GABARAPL2P60520 117 aa15.08■□□□□ 0.01
USP4-201ENST00000265560 CXCR4P61073 352 aa15.08■□□□□ 0.01
USP4-201ENST00000265560 NCF4Q15080 339 aa15.08■□□□□ 0.01
USP4-201ENST00000265560 ULK3Q6PHR2 472 aa15.08■□□□□ 0.01
USP4-201ENST00000265560 RASSF6Q6ZTQ3 369 aa15.08■□□□□ 0.01
USP4-201ENST00000265560 SLC34A3Q8N130 599 aa15.08■□□□□ 0.01
USP4-201ENST00000265560 LINC00471Q8N535 108 aa15.08■□□□□ 0.01
USP4-201ENST00000265560 C10orf53Q8N6V4 93 aa15.08■□□□□ 0.01
USP4-201ENST00000265560 TOR4AQ9NXH8 423 aa15.08■□□□□ 0.01
USP4-201ENST00000265560 FOXJ2Q9P0K8 574 aa15.08■□□□□ 0.01
USP4-201ENST00000265560 PCDHGB2Q9Y5G2 931 aa15.08■□□□□ 0.01
USP4-201ENST00000265560 DOCK10Q96BY6 2186 aa15.08■□□□□ 0
USP4-201ENST00000265560 C9J4A7 227 aa15.08■□□□□ 0
USP4-201ENST00000265560 HSMCR30P0CW71 290 aa15.08■□□□□ 0
USP4-201ENST00000265560 SMSP52788 366 aa15.08■□□□□ 0
USP4-201ENST00000265560 PAQR6Q6TCH4 344 aa15.08■□□□□ 0
USP4-201ENST00000265560 CD300LDQ6UXZ3 194 aa15.08■□□□□ 0
USP4-201ENST00000265560 FANK1Q8TC84 345 aa15.08■□□□□ 0
USP4-201ENST00000265560 PMM1Q92871 262 aa15.08■□□□□ 0
USP4-201ENST00000265560 IL20Q9NYY1 176 aa15.08■□□□□ 0
USP4-201ENST00000265560 AKAP7Q9P0M2 348 aaPredicted RBP15.08■□□□□ 0
USP4-201ENST00000265560 RSL24D1Q9UHA3 163 aaKnown RBP15.08■□□□□ 0
USP4-201ENST00000265560 CLEC2DQ9UHP7 191 aa15.08■□□□□ 0
USP4-201ENST00000265560 HRH3Q9Y5N1 445 aa15.08■□□□□ 0
USP4-201ENST00000265560 B4DXG7 233 aa15.08■□□□□ 0
USP4-201ENST00000265560 OTX2P32243 289 aa15.08■□□□□ 0
USP4-201ENST00000265560 SYT14P1Q58G82 188 aa15.08■□□□□ 0
USP4-201ENST00000265560 C1QL3Q5VWW1 255 aa15.08■□□□□ 0
USP4-201ENST00000265560 AP1ARQ63HQ0 302 aa15.08■□□□□ 0
USP4-201ENST00000265560 OAFQ86UD1 273 aa15.08■□□□□ 0
USP4-201ENST00000265560 LSMEM1Q8N8F7 131 aa15.08■□□□□ 0
USP4-201ENST00000265560 ISOC1Q96CN7 298 aa15.08■□□□□ 0
USP4-201ENST00000265560 TSC22D3Q99576 134 aa15.08■□□□□ 0
USP4-201ENST00000265560 UBQLN3Q9H347 655 aa15.08■□□□□ 0
USP4-201ENST00000265560 ACOT13Q9NPJ3 140 aa15.08■□□□□ 0
USP4-201ENST00000265560 MRTO4Q9UKD2 239 aaKnown RBP15.08■□□□□ 0
USP4-201ENST00000265560 EFCAB9A8MZ26 197 aa15.07■□□□□ 0
USP4-201ENST00000265560 FMO6PO60774 539 aa15.07■□□□□ 0
USP4-201ENST00000265560 CCKBRP32239 447 aa15.07■□□□□ 0
USP4-201ENST00000265560 EVI2BP34910 448 aa15.07■□□□□ 0
USP4-201ENST00000265560 GTF2IRD2BQ6EKJ0 949 aa15.07■□□□□ 0
USP4-201ENST00000265560 GTF2IRD2Q86UP8 949 aa15.07■□□□□ 0
USP4-201ENST00000265560 CDK20Q8IZL9 346 aa15.07■□□□□ 0
USP4-201ENST00000265560 CYB561A3Q8NBI2 242 aa15.07■□□□□ 0
USP4-201ENST00000265560 OR8J1Q8NGP2 316 aa15.07■□□□□ 0
USP4-201ENST00000265560 NR4A3Q92570 626 aa15.07■□□□□ 0
USP4-201ENST00000265560 RORBQ92753 470 aa15.07■□□□□ 0
USP4-201ENST00000265560 C12orf43Q96C57 262 aaKnown RBP15.07■□□□□ 0
USP4-201ENST00000265560 VMP1Q96GC9 406 aa15.07■□□□□ 0
USP4-201ENST00000265560 NCDNQ9UBB6 729 aa15.07■□□□□ 0
USP4-201ENST00000265560 SLC35A3Q9Y2D2 325 aa15.07■□□□□ 0
USP4-201ENST00000265560 HS3ST3B1Q9Y662 390 aa15.07■□□□□ 0
USP4-201ENST00000265560 FRYQ5TBA9 3013 aa15.07■□□□□ 0
USP4-201ENST00000265560 PTHP01270 115 aa15.07■□□□□ 0
USP4-201ENST00000265560 NRG3P56975 720 aa15.07■□□□□ 0
USP4-201ENST00000265560 DCAF7P61962 342 aa15.07■□□□□ 0
USP4-201ENST00000265560 PRKCDQ05655 676 aa15.07■□□□□ 0
USP4-201ENST00000265560 TMEM205Q6UW68 189 aa15.07■□□□□ 0
USP4-201ENST00000265560 DEFB124Q8NES8 71 aa15.07■□□□□ 0
USP4-201ENST00000265560 IFT27Q9BW83 186 aa15.07■□□□□ 0
USP4-201ENST00000265560 DEFB126Q9BYW3 111 aa15.07■□□□□ 0
USP4-201ENST00000265560 SEMA4CQ9C0C4 833 aa15.07■□□□□ 0
USP4-201ENST00000265560 ELOA3DA6NLF2 546 aaPredicted RBP15.06■□□□□ 0
USP4-201ENST00000265560 SHISA8B8ZZ34 492 aa15.06■□□□□ 0
USP4-201ENST00000265560 C9orf172C9J069 976 aa15.06■□□□□ 0
USP4-201ENST00000265560 FOXD2O60548 495 aaPredicted RBP15.06■□□□□ 0
USP4-201ENST00000265560 TACR3P29371 465 aa15.06■□□□□ 0
USP4-201ENST00000265560 STAT5AP42229 794 aa15.06■□□□□ 0
USP4-201ENST00000265560 TCF15Q12870 199 aa15.06■□□□□ 0
USP4-201ENST00000265560 ELOA3BQ3SY89 546 aa15.06■□□□□ 0
USP4-201ENST00000265560 HES3Q5TGS1 186 aa15.06■□□□□ 0
USP4-201ENST00000265560 ELOA3Q8NG57 546 aa15.06■□□□□ 0
USP4-201ENST00000265560 OR13F1Q8NGS4 319 aa15.06■□□□□ 0
USP4-201ENST00000265560 HS6ST2Q96MM7 605 aa15.06■□□□□ 0
USP4-201ENST00000265560 STRADBQ9C0K7 418 aa15.06■□□□□ 0
USP4-201ENST00000265560 SLC26A1Q9H2B4 701 aa15.06■□□□□ 0
USP4-201ENST00000265560 ANKRD10Q9NXR5 420 aa15.06■□□□□ 0
USP4-201ENST00000265560 SPAARA0A1B0GVQ0 90 aa15.06■□□□□ 0
USP4-201ENST00000265560 ATE1O95260 518 aa15.06■□□□□ 0
USP4-201ENST00000265560 OR10G3Q8NGC4 313 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms