RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 MED28Q9H204 178 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 MGAT4AQ9UM21 535 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 EXOGQ9Y2C4 368 aaKnown RBP9.32□□□□□ -0.92
LIG3-201ENST00000262327 LINC01387J3KSC0 135 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 SLC31A1O15431 190 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 TOXO94900 526 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 GIFP27352 417 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 HTR2AP28223 471 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 MAGEB1P43366 347 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 HTR4Q13639 388 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 ZIC1Q15915 447 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 DECR1Q16698 335 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 MRM1Q6IN84 353 aaKnown RBP9.32□□□□□ -0.92
LIG3-201ENST00000262327 SFXN4Q6P4A7 337 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 LYPD4Q6UWN0 246 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 TMEM64Q6YI46 380 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 ZNF600Q6ZNG1 722 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 SAMD14Q8IZD0 417 aaPredicted RBP9.32□□□□□ -0.92
LIG3-201ENST00000262327 HDDC3Q8N4P3 179 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 RAB42Q8N4Z0 105 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 OR11H7Q8NGC8 314 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 OR11H4Q8NGC9 324 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 OR5J2Q8NH18 312 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 PIGKQ92643 395 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 PTP4A1Q93096 173 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 IER2Q9BTL4 223 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 IFT22Q9H7X7 185 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 MCCC2Q9HCC0 563 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 ISYNA1Q9NPH2 558 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 DIABLOQ9NR28 239 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 SIDT1Q9NXL6 827 aaKnown RBP9.32□□□□□ -0.92
LIG3-201ENST00000262327 CA5BQ9Y2D0 317 aa9.32□□□□□ -0.92
LIG3-201ENST00000262327 UNC119BA6NIH7 251 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 C1QTNF3-AMACRE9PGA6 284 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 PSMD9O00233 223 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 CACNB4O00305 520 aaPredicted RBP9.31□□□□□ -0.92
LIG3-201ENST00000262327 CHP2O43745 196 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 IL9P15248 144 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 AK4P27144 223 aaPredicted RBP9.31□□□□□ -0.92
LIG3-201ENST00000262327 HAAOP46952 286 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 DGCR2P98153 550 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 SRSF5Q13243 272 aaKnown RBP9.31□□□□□ -0.92
LIG3-201ENST00000262327 TP53I3Q53FA7 332 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 CDC73Q6P1J9 531 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 NIPAL3Q6P499 406 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 OR5M3Q8NGP4 307 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 OR52N1Q8NH53 320 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 ZC3HAV1LQ96H79 300 aaKnown RBP9.31□□□□□ -0.92
LIG3-201ENST00000262327 PEX11GQ96HA9 241 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 ADAM30Q9UKF2 790 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 COLQQ9Y215 455 aaPredicted RBP9.31□□□□□ -0.92
LIG3-201ENST00000262327 LRRC72A6NJI9 287 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 SYT5O00445 386 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 SERPINI2O75830 405 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 MT-ND4P03905 459 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 PDGFAP04085 211 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 BMP7P18075 431 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 SLC6A1P30531 599 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 BTCP35070 178 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 THBS2P35442 1172 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 HSD17B2P37059 387 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 ZNF136P52737 540 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 ATP12AP54707 1039 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 SEC13P55735 322 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 POLR2GP62487 172 aaKnown RBP eCLIP9.31□□□□□ -0.92
LIG3-201ENST00000262327 TRA2BP62995 288 aaKnown RBP9.31□□□□□ -0.92
LIG3-201ENST00000262327 TNK1Q13470 666 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 MFSD12Q6NUT3 480 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 FIP1L1Q6UN15 594 aaKnown RBP9.31□□□□□ -0.92
LIG3-201ENST00000262327 MEPCEQ7L2J0 689 aaKnown RBP9.31□□□□□ -0.92
LIG3-201ENST00000262327 PLCZ1Q86YW0 608 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 OR8H3Q8N146 312 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 HMGB4Q8WW32 186 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 CHFRQ96EP1 664 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 PRSS27Q9BQR3 290 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 ZMIZ1Q9ULJ6 1067 aa9.31□□□□□ -0.92
LIG3-201ENST00000262327 CDHR4A6H8M9 788 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 H3BSH0 61 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 SGK494L7N484 410 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 IMPA2O14732 288 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 BET1O15155 118 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 KLF4O43474 513 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 RFPL3O75679 317 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 PPP1R3DO95685 299 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 APODP05090 189 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 NAA10P41227 235 aaPredicted RBP9.3□□□□□ -0.92
LIG3-201ENST00000262327 PITPNBP48739 271 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 SMAD4Q13485 552 aaKnown RBP9.3□□□□□ -0.92
LIG3-201ENST00000262327 CRMP1Q14194 572 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 EXOSC7Q15024 291 aaKnown RBP9.3□□□□□ -0.92
LIG3-201ENST00000262327 ZMYND11Q15326 602 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 ZSWIM7Q19AV6 140 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 GXYLT1Q4G148 440 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 TMEM35AQ53FP2 167 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 MRPL2Q5T653 305 aaKnown RBP9.3□□□□□ -0.92
LIG3-201ENST00000262327 PRPF38BQ5VTL8 546 aaKnown RBP9.3□□□□□ -0.92
LIG3-201ENST00000262327 AGBL4Q5VU57 503 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 HBMQ6B0K9 141 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 PRSS41Q7RTY9 318 aa9.3□□□□□ -0.92
LIG3-201ENST00000262327 C9orf62Q8N4C0 152 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms