RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 OGFRL1Q5TC84 451 aaPredicted RBP12.8□□□□□ -0.36
SIX4-201ENST00000216513 C3orf33Q6P1S2 294 aa12.8□□□□□ -0.36
SIX4-201ENST00000216513 SLITRK4Q8IW52 837 aa12.8□□□□□ -0.36
SIX4-201ENST00000216513 C9orf43Q8TAL5 461 aaPredicted RBP12.8□□□□□ -0.36
SIX4-201ENST00000216513 H1FXQ92522 213 aaKnown RBP12.8□□□□□ -0.36
SIX4-201ENST00000216513 TRPV4Q9HBA0 871 aa12.8□□□□□ -0.36
SIX4-201ENST00000216513 FBXO9Q9UK97 447 aaPredicted RBP12.8□□□□□ -0.36
SIX4-201ENST00000216513 LIM2P55344 173 aa12.8□□□□□ -0.36
SIX4-201ENST00000216513 TRA2AQ13595 282 aaKnown RBP eCLIP12.8□□□□□ -0.36
SIX4-201ENST00000216513 GK3PQ14409 553 aa12.8□□□□□ -0.36
SIX4-201ENST00000216513 PAGE3Q5JUK9 113 aa12.8□□□□□ -0.36
SIX4-201ENST00000216513 UBE2Q1Q7Z7E8 422 aa12.8□□□□□ -0.36
SIX4-201ENST00000216513 TOMM5Q8N4H5 51 aa12.8□□□□□ -0.36
SIX4-201ENST00000216513 ANKRA2Q9H9E1 313 aa12.8□□□□□ -0.36
SIX4-201ENST00000216513 OR14J1Q9UGF5 321 aa12.8□□□□□ -0.36
SIX4-201ENST00000216513 NME7Q9Y5B8 376 aa12.8□□□□□ -0.36
SIX4-201ENST00000216513 OR14I1A6ND48 311 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 NUDT21O43809 227 aaKnown RBP12.79□□□□□ -0.36
SIX4-201ENST00000216513 KDELR2P33947 212 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 ERVK-25P63136 954 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 SLC35A1P78382 337 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 TRILQ7L0X0 811 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 PCDHA9Q9Y5H5 950 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 ADAMTSL1Q8N6G6 1762 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 TSPAN12O95859 305 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 CHRNB1P11230 501 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 PRPS1P60891 318 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 ZNF808Q8N4W9 903 aaPredicted RBP12.79□□□□□ -0.36
SIX4-201ENST00000216513 ANKK1Q8NFD2 765 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 BAHD1Q8TBE0 780 aaPredicted RBP12.79□□□□□ -0.36
SIX4-201ENST00000216513 FAM230AA0A1W2PPH8 454 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 TARM1B6A8C7 271 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 GYPBP06028 91 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 MAPK3P27361 379 aaPredicted RBP12.79□□□□□ -0.36
SIX4-201ENST00000216513 ZNF766Q5HY98 468 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 ERMP1Q7Z2K6 904 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 KMT5CQ86Y97 462 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 APOBEC4Q8WW27 367 aaKnown RBP12.79□□□□□ -0.36
SIX4-201ENST00000216513 NT5C3BQ969T7 300 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 MND1Q9BWT6 205 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 ACTR3BQ9P1U1 418 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 ZNF443Q9Y2A4 671 aaPredicted RBP12.79□□□□□ -0.36
SIX4-201ENST00000216513 PEX16Q9Y5Y5 336 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 EEDO75530 441 aaKnown RBP12.79□□□□□ -0.36
SIX4-201ENST00000216513 OR2J2O76002 312 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 LPLP06858 475 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 ATF4P18848 351 aaPredicted RBP12.79□□□□□ -0.36
SIX4-201ENST00000216513 SOX3P41225 446 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 POLR2HP52434 150 aaKnown RBP12.79□□□□□ -0.36
SIX4-201ENST00000216513 PCBD1P61457 104 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 ELAVL1Q15717 326 aaKnown RBP12.79□□□□□ -0.36
SIX4-201ENST00000216513 RNF6Q9Y252 685 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 FTH1P19P0C7X4 201 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 TACR3P29371 465 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 OR1C1Q15619 314 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 ZCCHC14Q8WYQ9 949 aaKnown RBP12.79□□□□□ -0.36
SIX4-201ENST00000216513 APH1AQ96BI3 265 aa12.79□□□□□ -0.36
SIX4-201ENST00000216513 SLC25A44Q96H78 314 aaPredicted RBP12.79□□□□□ -0.36
SIX4-201ENST00000216513 CNN2Q99439 309 aaKnown RBP12.79□□□□□ -0.36
SIX4-201ENST00000216513 TRAV17A0A0B4J275 112 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 PPM1DO15297 605 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 SLCO2B1O94956 709 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 HTR3BO95264 441 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 CNOT4O95628 575 aaKnown RBP12.78□□□□□ -0.36
SIX4-201ENST00000216513 RHCEP18577 417 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 FAM189A2Q15884 450 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 ZNF675Q8TD23 568 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 RSPRY1Q96DX4 576 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 TMEM80Q96HE8 168 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 SAMD8Q96LT4 415 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 P4HTMQ9NXG6 502 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 IER3IP1Q9Y5U9 82 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 LAMB1P07942 1786 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 OR2AT4A6NND4 320 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 J3KTA2 159 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 L7N2F9 121 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 RNASET2O00584 256 aaKnown RBP12.78□□□□□ -0.36
SIX4-201ENST00000216513 VAMP2P63027 116 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 PIN1Q13526 163 aaPredicted RBP12.78□□□□□ -0.36
SIX4-201ENST00000216513 SLC6A15Q9H2J7 730 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 JRKO75564 520 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 CELA2BP08218 269 aaPredicted RBP12.78□□□□□ -0.36
SIX4-201ENST00000216513 CD3GP09693 182 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 BTG2P78543 158 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 APOFQ13790 326 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 ZNF791Q3KP31 576 aaPredicted RBP12.78□□□□□ -0.36
SIX4-201ENST00000216513 FAM205BPQ63HN1 556 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 PLBD1Q6P4A8 553 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 MSANTD1Q6ZTZ1 278 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 MISPQ8IVT2 679 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 GPALPP1Q8IXQ4 340 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 OR11G2Q8NGC1 345 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 PPP1R35Q8TAP8 253 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 TMIGD2Q96BF3 282 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 C16orf58Q96GQ5 468 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 ARMC1Q9NVT9 282 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 PCDHGA5Q9Y5G8 931 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 NPFFR2Q9Y5X5 522 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 SHANK3Q9BYB0 1731 aa12.78□□□□□ -0.36
SIX4-201ENST00000216513 SYT7O43581 403 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms