RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 TAC4Q86UU9 113 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 EIF4E3Q8N5X7 224 aaKnown RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 OR2D3Q8NGH3 330 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 WFIKKN2Q8TEU8 576 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 MBOAT4Q96T53 435 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 METTL9Q9H1A3 318 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 ZDHHC6Q9H6R6 413 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 ENY2Q9NPA8 101 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 KLHL13Q9P2N7 655 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 SMIM28A0A1B0GU29 152 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 A0A1W2PQ45 241 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 A0A1W2PQY0 241 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 MMP2P08253 660 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 OR2T7P0C7T2 308 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 APEX1P27695 318 aaKnown RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 HAAOP46952 286 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF280AP59817 542 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CRTC1Q6UUV9 634 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 TMIGD1Q6UXZ0 262 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 DPY19L4Q7Z388 723 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 OR2T27Q8NH04 317 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 RBP7Q96R05 134 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 HRGP04196 525 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 LPLP06858 475 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 NAGAP17050 411 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 TPPP2P59282 170 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 ITPK1Q13572 414 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 XKR7Q5GH72 579 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CHADLQ6NUI6 762 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 GRINAQ7Z429 371 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 GPR142Q7Z601 462 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 Q8N9G6 341 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 INPP5KQ9BT40 448 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CHRDL1Q9BU40 450 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 BEX1Q9HBH7 125 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 MRPS30Q9NP92 439 aaKnown RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 VSX1Q9NZR4 365 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 UBE2J1Q9Y385 318 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 C7orf66A4D0T2 115 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 C17orf112F2Z3M2 114 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 GTF2A2P52657 109 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CLINT1Q14677 625 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 GALNT10Q86SR1 603 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 OR51F2Q8NH61 342 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 NPRL2Q8WTW4 380 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CRLF2Q9HC73 371 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 GOLGA4Q13439 2230 aaKnown RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 ANKRD66B4E2M5 251 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CD37P11049 281 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 AQP2P41181 271 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 HBA1P69905 142 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 LRRC37A5PQ49AS3 106 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 XAF1Q6GPH4 301 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 GLDNQ6ZMI3 551 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 SLC16A12Q6ZSM3 486 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 NPAS4Q8IUM7 802 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 GALNT16Q8N428 558 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 OR6K3Q8NGY3 331 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 OR1E3Q8WZA6 343 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 FBXW5Q969U6 566 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 ORAI3Q9BRQ5 295 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 SLC25A19Q9HC21 320 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 FMN2Q9NZ56 1722 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 PPM1DO15297 605 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 IRF1P10914 325 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 NDUFA6P56556 154 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 DECR1Q16698 335 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 VTCN1Q7Z7D3 282 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 TMEM234Q8WY98 164 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 UPRTQ96BW1 309 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CLIP3Q96DZ5 547 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 C3orf30Q96M34 536 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 TSSK2Q96PF2 358 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 NSUN3Q9H649 340 aaKnown RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CYSLTR2Q9NS75 346 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 RLIMQ9NVW2 624 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CLEC4EQ9ULY5 219 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 SLCO1B1Q9Y6L6 691 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 WASH3PC4AMC7 463 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CDK2AP1O14519 115 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 KCNE1P15382 129 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 TAF1CQ15572 869 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF74Q16587 644 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 EEF1DP3Q658K8 133 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 TXNRD3NBQ6F5E7 133 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF600Q6ZNG1 722 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 TPRG1Q6ZUI0 275 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 TAS1R3Q7RTX0 852 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 PPP1R13LQ8WUF5 828 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CLSTN3Q9BQT9 956 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 SLC12A9Q9BXP2 914 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 EQTNQ9NQ60 294 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 H7BYZ3 331 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 PTP4A3O75365 173 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 RPLP1P05386 114 aaKnown RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 OPRD1P41143 372 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 RACK1P63244 317 aaKnown RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 RPE65Q16518 533 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 BATFQ16520 125 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 OR14L1PQ8NHC6 308 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms