RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CCL28Q9NRJ3 127 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 INPP5EQ9NRR6 644 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 AGPAT5Q9NUQ2 364 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 AIG1Q9NVV5 245 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 RBM28Q9NW13 759 aaKnown RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 COMMD8Q9NX08 183 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CWC25Q9NXE8 425 aaPredicted RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 GDAP2Q9NXN4 497 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 SIGLEC8Q9NYZ4 499 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 NDUFA13Q9P0J0 144 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 HMG20BQ9P0W2 317 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CLCF1Q9UBD9 225 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 P2RX2Q9UBL9 471 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 MTRF1LQ9UGC7 380 aaKnown RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 DCDC2Q9UHG0 476 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ANAPC7Q9UJX3 599 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 TBX21Q9UL17 535 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 PLA2G4CQ9UP65 541 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 RNF6Q9Y252 685 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 EIF3LQ9Y262 564 aaKnown RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 ITM2BQ9Y287 266 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 TRAPPC4Q9Y296 219 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 WDR45Q9Y484 360 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 UGT2A1Q9Y4X1 527 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 MAB21L2Q9Y586 359 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 FKBP7Q9Y680 259 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CACNG2Q9Y698 323 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 SCN2AQ99250 2005 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 THSD7BQ9C0I4 1608 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ZNF407Q9C0G0 2248 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 UBE4BO95155 1302 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 MAP3K15Q6ZN16 1313 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 IGSF9BQ9UPX0 1349 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 TENM3Q9P273 2699 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 IGLV4-60A0A075B6I1 120 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 IGKV1D-17A0A075B6S4 117 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 IGHV3OR16-13A0A075B7E8 117 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 IGHV1OR21-1A0A087WYE8 117 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 IGHV2-70DA0A0C4DH43 119 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 PLAC8L1A1L4L8 177 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 A6NDX4 124 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 CFAP73A6NFT4 308 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ZNF233A6NK53 670 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ZNF705GA8MUZ8 300 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 C11orf94C9JXX5 98 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 H3BMQ9 156 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 TMX2-CTNND1H3BSU7 103 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 H3BTX0 84 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 PES1O00541 588 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 SDHDO14521 159 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 CTAGE5O15320 804 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 CHADO15335 359 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 STX7O15400 261 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 TAPBPO15533 448 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 CD5LO43866 347 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 AIREO43918 545 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 OR10H3O60404 316 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ICOSLGO75144 302 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 SS18L1O75177 396 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 ECI2O75521 394 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 STX11O75558 287 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 BCAS2O75934 225 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 BBOX1O75936 387 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 NEBLO76041 1014 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ANP32DO95626 131 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 PNPP00491 289 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 CA1P00915 261 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 TGFAP01135 160 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 IGHG4P01861 327 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 SLC4A1P02730 911 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 DCNP07585 359 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 HSP90AA1P07900 732 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 GSTA1P08263 222 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 HBQ1P09105 142 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 HMOX1P09601 288 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 TLX1NBP0CAT3 122 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 THRBP10828 461 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 RALAP11233 206 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ANXA3P12429 323 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ADRB3P13945 408 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 FERP16591 822 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ZNF14P17017 642 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 ZNF18P17022 549 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 TBXA2RP21731 343 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 CCNCP24863 283 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 DPP4P27487 766 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 RPA1P27694 616 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 HOXD10P28358 340 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 PRDX3P30048 256 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 NTSP30990 170 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 SFNP31947 248 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 HPDP32754 393 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 DLSTP36957 453 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 LEPP41159 167 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 RPS9P46781 194 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 ACADVLP49748 655 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 NOVA1P51513 510 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 SUCLG1P53597 346 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 HERVK_113P63132 956 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ERVK-8P63133 956 aa0.18□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms