RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TMCO5AQ8N6Q1 288 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 MPP4Q96JB8 637 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 IMMP1LQ96LU5 166 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 ZNF426Q9BUY5 554 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 DEFB126Q9BYW3 111 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 TBL1XR1Q9BZK7 514 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 LAT2Q9GZY6 243 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 KRCC1Q9NPI7 259 aaPredicted RBP15.44■□□□□ 0.06
CLN3-252ENST00000636907 C20orf141Q9NUB4 165 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 IMPAD1Q9NX62 359 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 MYOTQ9UBF9 498 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 BLOC1S6Q9UL45 172 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.44■□□□□ 0.06
CLN3-252ENST00000636907 SPAARA0A1B0GVQ0 90 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 PCNX2A6NKB5 2137 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 SOCS6O14544 535 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 CDC42EP2O14613 210 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 NDUFB5O43674 189 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 IGHEP01854 428 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 RAB40ALP0C0E4 278 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 FTH1P19P0C7X4 201 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 IFI30P13284 250 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 STAT5AP42229 794 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 NR1H2P55055 460 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 FBXW4P57775 412 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 GABARAPL2P60520 117 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 ZNF117Q03924 483 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 PRKCDQ05655 676 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 EFR3AQ14156 821 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 C12orf73Q69YU5 71 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 OR11G2Q8NGC1 345 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 OR5M3Q8NGP4 307 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 SH3YL1Q96HL8 342 aaPredicted RBP15.44■□□□□ 0.06
CLN3-252ENST00000636907 HS6ST2Q96MM7 605 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 DPH1Q9BZG8 443 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 TCFL5Q9UL49 500 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 MED31Q9Y3C7 131 aa15.44■□□□□ 0.06
CLN3-252ENST00000636907 SCO2O43819 266 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 FOXD2O60548 495 aaPredicted RBP15.43■□□□□ 0.06
CLN3-252ENST00000636907 MAKP20794 623 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 RBM34P42696 430 aaKnown RBP15.43■□□□□ 0.06
CLN3-252ENST00000636907 PIGFQ07326 219 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 GINS1Q14691 196 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 EXT1Q16394 746 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 NADK2Q4G0N4 442 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 ZNF773Q6PK81 442 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 SATL1Q86VE3 508 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 OR8D4Q8NGM9 314 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 DNAJA4Q8WW22 397 aaPredicted RBP15.43■□□□□ 0.06
CLN3-252ENST00000636907 C3orf49Q96BT1 292 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 NODALQ96S42 347 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 KLHDC3Q9BQ90 382 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 ATP13A2Q9NQ11 1180 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 MEPEQ9NQ76 525 aaPredicted RBP15.43■□□□□ 0.06
CLN3-252ENST00000636907 PAK1IP1Q9NWT1 392 aaPredicted RBP15.43■□□□□ 0.06
CLN3-252ENST00000636907 SELENONQ9NZV5 590 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 HEATR5AQ86XA9 2040 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 SDK2Q58EX2 2172 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 EXPH5Q8NEV8 1989 aa15.43■□□□□ 0.06
CLN3-252ENST00000636907 A0A1W2PQ72 361 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 PTGES3LE9PB15 166 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 ADAM10O14672 748 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 HCRTR2O43614 444 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 OR2J2O76002 312 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 HTR1AP08908 422 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 NAGAP17050 411 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 CTBP2P56545 445 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 CDK5Q00535 292 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 BROXQ5VW32 411 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 FOXB2Q5VYV0 432 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 PLAG1Q6DJT9 500 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 WBP2NLQ6ICG8 309 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 ACSM5Q6NUN0 579 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 LYPD8Q6UX82 237 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 PPP1R32Q7Z5V6 425 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 P3H2Q8IVL5 708 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 TEX47Q8TBZ9 253 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 HGDQ93099 445 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 ZNF524Q96C55 264 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 RHNO1Q9BSD3 238 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 IRF2BPLQ9H1B7 796 aa15.42■□□□□ 0.06
CLN3-252ENST00000636907 FARSAQ9Y285 508 aaKnown RBP15.42■□□□□ 0.06
CLN3-252ENST00000636907 GNB5O14775 395 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 EIF4E2O60573 245 aaKnown RBP15.41■□□□□ 0.06
CLN3-252ENST00000636907 FAM20BO75063 409 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 TNFSF15O95150 251 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 ENDOUP21128 410 aaKnown RBP15.41■□□□□ 0.06
CLN3-252ENST00000636907 OTX2P32243 289 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 ALDH3B2P48448 385 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 GIPRP48546 466 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 CASP12Q6UXS9 341 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 ZNF620Q6ZNG0 422 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 PTCHD4Q6ZW05 846 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 NDUFAF7Q7L592 441 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 ESX1Q8N693 406 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 M1APQ8TC57 530 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 SLC22A8Q8TCC7 542 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 BPIFA2Q96DR5 249 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 SLC25A19Q9HC21 320 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 MMP25Q9NPA2 562 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms