RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 FAM110BQ8TC76 370 aa12.94□□□□□ -0.34
PNKP-218ENST00000625299 HOXB13Q92826 284 aaPredicted RBP12.94□□□□□ -0.34
PNKP-218ENST00000625299 GIMAP5Q96F15 307 aa12.94□□□□□ -0.34
PNKP-218ENST00000625299 C1QTNF6Q9BXI9 259 aa12.94□□□□□ -0.34
PNKP-218ENST00000625299 IQCGQ9H095 443 aaKnown RBP12.94□□□□□ -0.34
PNKP-218ENST00000625299 CDC42EP4Q9H3Q1 356 aaKnown RBP12.94□□□□□ -0.34
PNKP-218ENST00000625299 GPC6Q9Y625 555 aaPredicted RBP12.94□□□□□ -0.34
PNKP-218ENST00000625299 ATP23Q9Y6H3 246 aa12.94□□□□□ -0.34
PNKP-218ENST00000625299 HEATR1Q9H583 2144 aaKnown RBP12.94□□□□□ -0.34
PNKP-218ENST00000625299 CCT8L1PA6NM43 557 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 GTPBP1O00178 669 aaKnown RBP12.93□□□□□ -0.34
PNKP-218ENST00000625299 SMAD9O15198 467 aaKnown RBP12.93□□□□□ -0.34
PNKP-218ENST00000625299 AKAP10O43572 662 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 PGM3O95394 542 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 APEHP13798 732 aaKnown RBP12.93□□□□□ -0.34
PNKP-218ENST00000625299 PRKCAP17252 672 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 EFNA1P20827 205 aaPredicted RBP12.93□□□□□ -0.34
PNKP-218ENST00000625299 ATP6V1C1P21283 382 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 P2RX1P51575 399 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 CCR4P51679 360 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 RAC3P60763 192 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 POU6F2P78424 691 aaPredicted RBP12.93□□□□□ -0.34
PNKP-218ENST00000625299 SELENBP1Q13228 472 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 ARL13AQ5H913 290 aaPredicted RBP12.93□□□□□ -0.34
PNKP-218ENST00000625299 LRIG3Q6UXM1 1119 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 GALNT5Q7Z7M9 940 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 ZNF433Q8N7K0 673 aaPredicted RBP12.93□□□□□ -0.34
PNKP-218ENST00000625299 CCNYL1Q8N7R7 359 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 ZNF614Q8N883 585 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 DCAKDQ8WVC6 231 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 CDS1Q92903 461 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 MSI2Q96DH6 328 aaKnown RBP12.93□□□□□ -0.34
PNKP-218ENST00000625299 OR5B2Q96R09 309 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 ZDHHC18Q9NUE0 388 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 WBP11Q9Y2W2 641 aaKnown RBP12.93□□□□□ -0.34
PNKP-218ENST00000625299 TRAF6Q9Y4K3 522 aa12.93□□□□□ -0.34
PNKP-218ENST00000625299 GOLGA8QA0A0J9YX86 632 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 SERTM1A2A2V5 107 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 GOLGA8OA6NCC3 632 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 GOLGA8NF8WBI6 632 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 H3BNH8 94 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 GOLGA8RI6L899 631 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 CYTIPO60759 359 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 PGRP06401 933 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 BMP4P12644 408 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 LCN1P31025 176 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 PDLIM4P50479 330 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 PRKAA2P54646 552 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 CHRNB3Q05901 458 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 SQLEQ14534 574 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 ZNF385BQ569K4 471 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 MTERF4Q7Z6M4 381 aaKnown RBP12.92□□□□□ -0.34
PNKP-218ENST00000625299 SLC22A9Q8IVM8 553 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 ZNF527Q8NB42 609 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 FAM76AQ8TAV0 307 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 PPCDCQ96CD2 204 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 PIMREGQ9BSJ6 248 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 INPP5KQ9BT40 448 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 BTBD2Q9BX70 525 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 C12orf65Q9H3J6 166 aaKnown RBP12.92□□□□□ -0.34
PNKP-218ENST00000625299 GSTO2Q9H4Y5 243 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 SH3BP4Q9P0V3 963 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 NTMQ9P121 344 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 PMF1-BGLAPU3KQ54 211 aa12.92□□□□□ -0.34
PNKP-218ENST00000625299 ZNF724A8MTY0 619 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 SEC22BO75396 215 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 RSL1D1O76021 490 aaKnown RBP12.91□□□□□ -0.34
PNKP-218ENST00000625299 H6PDO95479 791 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 SNRPAP09012 282 aaKnown RBP12.91□□□□□ -0.34
PNKP-218ENST00000625299 SUMO3P55854 103 aaPredicted RBP12.91□□□□□ -0.34
PNKP-218ENST00000625299 QPRTQ15274 297 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 ZNF544Q6NX49 715 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 C8orf74Q6P047 294 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 CDC73Q6P1J9 531 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 CLHC1Q8NHS4 586 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 GPR119Q8TDV5 335 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 ZNF75CPQ92670 426 aaPredicted RBP12.91□□□□□ -0.34
PNKP-218ENST00000625299 L3HYPDHQ96EM0 354 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 MRGPRX4Q96LA9 322 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 TRMOQ9BU70 441 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 PRR14Q9BWN1 585 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 FUT8Q9BYC5 575 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 ANKZF1Q9H8Y5 726 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 RRAGDQ9NQL2 400 aaPredicted RBP12.91□□□□□ -0.34
PNKP-218ENST00000625299 ZCCHC3Q9NUD5 404 aaKnown RBP12.91□□□□□ -0.34
PNKP-218ENST00000625299 ZNF180Q9UJW8 692 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 ICAM5Q9UMF0 924 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 SLC25A15Q9Y619 301 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 FKBP7Q9Y680 259 aa12.91□□□□□ -0.34
PNKP-218ENST00000625299 HSPA4LO95757 839 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 TGFAP01135 160 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 GSTA1P08263 222 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 NR4A2P43354 598 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 LASP1Q14847 261 aaKnown RBP12.9□□□□□ -0.34
PNKP-218ENST00000625299 IQCCQ4KMZ1 466 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 KLHL26Q53HC5 615 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.9□□□□□ -0.34
PNKP-218ENST00000625299 FBXW9Q5XUX1 488 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 C3orf33Q6P1S2 294 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 ZCCHC12Q6PEW1 402 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms