RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SLC25A35Q3KQZ1 300 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 UBE2NLQ5JXB2 153 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 ADGRF1Q5T601 910 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 PRAMEF13Q5VWM6 474 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 ZNF660Q6AZW8 331 aaPredicted RBP10.07□□□□□ -0.8
UPF3A-212ENST00000619079 UQCC3Q6UW78 93 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 TECPR1Q7Z6L1 1165 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 TMPRSS11BQ86T26 416 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 ABHD4Q8TB40 342 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 SETD7Q8WTS6 366 aaKnown RBP10.07□□□□□ -0.8
UPF3A-212ENST00000619079 NDC1Q9BTX1 674 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 SORBS1Q9BX66 1292 aaKnown RBP10.07□□□□□ -0.8
UPF3A-212ENST00000619079 MFRPQ9BY79 579 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 DDX31Q9H8H2 851 aaKnown RBP10.07□□□□□ -0.8
UPF3A-212ENST00000619079 ISG20L2Q9H9L3 353 aaKnown RBP10.07□□□□□ -0.8
UPF3A-212ENST00000619079 NOX3Q9HBY0 568 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 POLMQ9NP87 494 aaPredicted RBP10.07□□□□□ -0.8
UPF3A-212ENST00000619079 TAAR2Q9P1P5 351 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 FLVCR2Q9UPI3 526 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 PCDHGA9Q9Y5G4 932 aaKnown RBP10.07□□□□□ -0.8
UPF3A-212ENST00000619079 CHURC1-FNTBB4DL54 471 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 TEX46H3BTG2 121 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 HMGN4O00479 90 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 GNB5O14775 395 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 KHDRBS3O75525 346 aaKnown RBP10.07□□□□□ -0.8
UPF3A-212ENST00000619079 SLCO2B1O94956 709 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 SERPINA3P01011 423 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 UBBP0CG47 229 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 UBCP0CG48 685 aaKnown RBP10.07□□□□□ -0.8
UPF3A-212ENST00000619079 ATXN8OSP0DMR3 200 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 VIPR1P32241 457 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 CSNK1DP48730 415 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 MANFP55145 182 aaKnown RBP10.07□□□□□ -0.8
UPF3A-212ENST00000619079 RPS27AP62979 156 aaKnown RBP10.07□□□□□ -0.8
UPF3A-212ENST00000619079 UBA52P62987 128 aaKnown RBP10.07□□□□□ -0.8
UPF3A-212ENST00000619079 TRAM2Q15035 370 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 PGGHGQ32M88 737 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 CLEC12AQ5QGZ9 265 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 ARL9Q6T311 187 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 TPRG1Q6ZUI0 275 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 C6orf120Q7Z4R8 191 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 KRT78Q8N1N4 520 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 PIGXQ8TBF5 258 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 SLC5A11Q8WWX8 675 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 THAP4Q8WY91 577 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 RAB8BQ92930 207 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 WDR34Q96EX3 536 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 PDCD10Q9BUL8 212 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 RSPO3Q9BXY4 272 aaPredicted RBP10.07□□□□□ -0.8
UPF3A-212ENST00000619079 OR51I1Q9H343 314 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 TAS2R3Q9NYW6 316 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 NTMQ9P121 344 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 OPN4Q9UHM6 478 aa10.07□□□□□ -0.8
UPF3A-212ENST00000619079 GPN3Q9UHW5 284 aaPredicted RBP10.07□□□□□ -0.8
UPF3A-212ENST00000619079 MRTO4Q9UKD2 239 aaKnown RBP10.07□□□□□ -0.8
UPF3A-212ENST00000619079 A0A087WUU8 490 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 DAPL1A0PJW8 107 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 GABARAPH6UMI1 98 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 CCL16O15467 120 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 TBX19O60806 448 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 EGFP01133 1207 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 ATP1B1P05026 303 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 KLK1P06870 262 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 RPA2P15927 270 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 FPR3P25089 353 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 SERPINA4P29622 427 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 CORO1AP31146 461 aaKnown RBP10.06□□□□□ -0.8
UPF3A-212ENST00000619079 RAD52P43351 418 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 ERVK-25P63136 954 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 MRPS10P82664 201 aaKnown RBP10.06□□□□□ -0.8
UPF3A-212ENST00000619079 MICBQ29980 383 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 FAM209BQ5JX69 171 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 OLFML2AQ68BL7 652 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 LILRA6Q6PI73 481 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 HAGHLQ6PII5 290 aaPredicted RBP10.06□□□□□ -0.8
UPF3A-212ENST00000619079 ADCK2Q7Z695 626 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 APCDD1Q8J025 514 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 SVBPQ8N300 66 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 SIRT6Q8N6T7 355 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 C12orf76Q8N812 135 aaPredicted RBP10.06□□□□□ -0.8
UPF3A-212ENST00000619079 DCAF4L2Q8NA75 395 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 VN1R2Q8NFZ6 395 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 OR51G2Q8NGK0 314 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 OR10K1Q8NGX5 313 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 OR6K2Q8NGY2 324 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 BBS10Q8TAM1 723 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 SMAP2Q8WU79 429 aaPredicted RBP10.06□□□□□ -0.8
UPF3A-212ENST00000619079 THEM6Q8WUY1 208 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 FOXJ1Q92949 421 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 NEIL2Q969S2 332 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 WFDC6Q9BQY6 131 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 ESRP2Q9H6T0 727 aaKnown RBP10.06□□□□□ -0.8
UPF3A-212ENST00000619079 EXOSC3Q9NQT5 275 aaKnown RBP10.06□□□□□ -0.8
UPF3A-212ENST00000619079 CTPS2Q9NRF8 586 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 KLHL9Q9P2J3 617 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 MBD2Q9UBB5 411 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 NFKBIL1Q9UBC1 381 aaPredicted RBP10.06□□□□□ -0.8
UPF3A-212ENST00000619079 CLEC4AQ9UMR7 237 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 YIPF1Q9Y548 306 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 INSL5Q9Y5Q6 135 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms