RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 SNX8Q9Y5X2 465 aa16.96■□□□□ 0.31
CDX1-202ENST00000616154 PRR14LQ5THK1 2151 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 C7orf72A4D263 438 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 NPIPB9F8W1W9 429 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 NDUFB5O43674 189 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 SS18L1O75177 396 aaPredicted RBP16.96■□□□□ 0.3
CDX1-202ENST00000616154 LY6G6DO95868 133 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 THBDP07204 575 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 IL11P20809 199 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 ARFIP2P53365 341 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 EXOC3L2Q2M3D2 409 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 CTU2Q2VPK5 515 aaKnown RBP16.96■□□□□ 0.3
CDX1-202ENST00000616154 METTL21CQ5VZV1 264 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 ANKRD34AQ69YU3 496 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 OR4F3Q6IEY1 312 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 FIGNL1Q6PIW4 674 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 CIARTQ8N365 385 aaPredicted RBP16.96■□□□□ 0.3
CDX1-202ENST00000616154 ANKS4BQ8N8V4 417 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 OR10D3Q8NH80 312 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 MIPOL1Q8TD10 442 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 CDS1Q92903 461 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 ZBTB8AQ96BR9 441 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 PERPQ96FX8 193 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 BDH2Q9BUT1 245 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 DPY30Q9C005 99 aa16.96■□□□□ 0.3
CDX1-202ENST00000616154 MCTS1Q9ULC4 181 aaKnown RBP16.96■□□□□ 0.3
CDX1-202ENST00000616154 FAF1Q9UNN5 650 aaPredicted RBP16.96■□□□□ 0.3
CDX1-202ENST00000616154 CSPG4Q6UVK1 2322 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 GOLGA8QA0A0J9YX86 632 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 GOLGA8OA6NCC3 632 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 GOLGA8NF8WBI6 632 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 PLGP00747 810 aaPredicted RBP16.95■□□□□ 0.3
CDX1-202ENST00000616154 ALDOCP09972 364 aaKnown RBP16.95■□□□□ 0.3
CDX1-202ENST00000616154 PSMA4P25789 261 aaKnown RBP16.95■□□□□ 0.3
CDX1-202ENST00000616154 MRPL19P49406 292 aaKnown RBP16.95■□□□□ 0.3
CDX1-202ENST00000616154 CLNS1AP54105 237 aaKnown RBP16.95■□□□□ 0.3
CDX1-202ENST00000616154 CTBP2P56545 445 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 PHC1P78364 1004 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 TP53BP2Q13625 1128 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 BEX5Q5H9J7 111 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 AP1ARQ63HQ0 302 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 PPP4R4Q6NUP7 873 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 SPATA19Q7Z5L4 167 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 GALNT10Q86SR1 603 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 CLECL1Q8IZS7 167 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 IGFBPL1Q8WX77 278 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 JADE3Q92613 823 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 OTUB1Q96FW1 271 aaPredicted RBP16.95■□□□□ 0.3
CDX1-202ENST00000616154 GSX2Q9BZM3 304 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 SERHL2Q9H4I8 314 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 RABEP2Q9H5N1 569 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 ZNF385DQ9H6B1 395 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 GLRX2Q9NS18 164 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 AIG1Q9NVV5 245 aa16.95■□□□□ 0.3
CDX1-202ENST00000616154 HIVEP2P31629 2446 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 PRSS51A0A1B0GVH4 220 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.94■□□□□ 0.3
CDX1-202ENST00000616154 ADAMDEC1O15204 470 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 KLF4O43474 513 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 GUSBP08236 651 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 RAC1P63000 192 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 IRX1P78414 480 aaPredicted RBP16.94■□□□□ 0.3
CDX1-202ENST00000616154 CBX1P83916 185 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 PGS1Q32NB8 556 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 PLPPR5Q32ZL2 321 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 SPDYE7PQ495Y7 208 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 KLHL26Q53HC5 615 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 DCST2Q5T1A1 773 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 CCNJQ5T5M9 372 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 ANXA8L1Q5VT79 327 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 STAC2Q6ZMT1 411 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 ESPNLQ6ZVH7 1005 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 OR2V1Q8NHB1 315 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 BCAS4Q8TDM0 211 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 ADAMTS15Q8TE58 950 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 NPAS1Q99742 590 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 HOXD1Q9GZZ0 328 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 FANCFQ9NPI8 374 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 MED17Q9NVC6 651 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 CLEC4AQ9UMR7 237 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 ARL2BPQ9Y2Y0 163 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 KCNE3Q9Y6H6 103 aa16.94■□□□□ 0.3
CDX1-202ENST00000616154 USF3Q68DE3 2245 aa16.93■□□□□ 0.3
CDX1-202ENST00000616154 SCDO00767 359 aa16.93■□□□□ 0.3
CDX1-202ENST00000616154 CFLARO15519 480 aa16.93■□□□□ 0.3
CDX1-202ENST00000616154 CXCL13O43927 109 aa16.93■□□□□ 0.3
CDX1-202ENST00000616154 SYNGR4O95473 234 aa16.93■□□□□ 0.3
CDX1-202ENST00000616154 AK1P00568 194 aa16.93■□□□□ 0.3
CDX1-202ENST00000616154 PAX1P15863 534 aa16.93■□□□□ 0.3
CDX1-202ENST00000616154 PTH2RP49190 550 aa16.93■□□□□ 0.3
CDX1-202ENST00000616154 ZNF41P51814 821 aaPredicted RBP16.93■□□□□ 0.3
CDX1-202ENST00000616154 CD226Q15762 336 aa16.93■□□□□ 0.3
CDX1-202ENST00000616154 GKAP1Q5VSY0 366 aaPredicted RBP16.93■□□□□ 0.3
CDX1-202ENST00000616154 PLEKHM3Q6ZWE6 761 aa16.93■□□□□ 0.3
CDX1-202ENST00000616154 GATSQ8NAP1 163 aa16.93■□□□□ 0.3
CDX1-202ENST00000616154 RNF145Q96MT1 663 aa16.93■□□□□ 0.3
CDX1-202ENST00000616154 OR7D2Q96RA2 312 aa16.93■□□□□ 0.3
CDX1-202ENST00000616154 GPR45Q9Y5Y3 372 aa16.93■□□□□ 0.3
CDX1-202ENST00000616154 RNF103-CHMP3A0A140T963 221 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 TRIM64A6NGJ6 449 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms