RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 KIF18BQ86Y91 864 aa13.56□□□□□ -0.24
TRIM28-205ENST00000595028 ZZZ3Q8IYH5 903 aa13.56□□□□□ -0.24
TRIM28-205ENST00000595028 CNEP1R1Q8N9A8 125 aa13.56□□□□□ -0.24
TRIM28-205ENST00000595028 FAM71CQ8NEG0 241 aa13.56□□□□□ -0.24
TRIM28-205ENST00000595028 OR5W2Q8NH69 310 aa13.56□□□□□ -0.24
TRIM28-205ENST00000595028 OR2V1Q8NHB1 315 aa13.56□□□□□ -0.24
TRIM28-205ENST00000595028 RFWD2Q8NHY2 731 aa13.56□□□□□ -0.24
TRIM28-205ENST00000595028 FBXO27Q8NI29 283 aa13.56□□□□□ -0.24
TRIM28-205ENST00000595028 GPR119Q8TDV5 335 aa13.56□□□□□ -0.24
TRIM28-205ENST00000595028 MRGPRX4Q96LA9 322 aa13.56□□□□□ -0.24
TRIM28-205ENST00000595028 KLHL15Q96M94 604 aa13.56□□□□□ -0.24
TRIM28-205ENST00000595028 RBM24Q9BX46 236 aaKnown RBP13.56□□□□□ -0.24
TRIM28-205ENST00000595028 LAT2Q9GZY6 243 aa13.56□□□□□ -0.24
TRIM28-205ENST00000595028 SLC6A13Q9NSD5 602 aa13.56□□□□□ -0.24
TRIM28-205ENST00000595028 PAQR5Q9NXK6 330 aaPredicted RBP13.56□□□□□ -0.24
TRIM28-205ENST00000595028 GALNT8Q9NY28 637 aa13.56□□□□□ -0.24
TRIM28-205ENST00000595028 A0A0J9YW62 118 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 ETV2O00321 342 aaPredicted RBP13.55□□□□□ -0.24
TRIM28-205ENST00000595028 TNFSF11O14788 317 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 MSTNO14793 375 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 DNAJA2O60884 412 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 AQP8O94778 261 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 H6PDO95479 791 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 KRT75O95678 551 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 CSTAP01040 98 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 SHC1P29353 583 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 IDH3AP50213 366 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 POLR2JP52435 117 aaKnown RBP13.55□□□□□ -0.24
TRIM28-205ENST00000595028 STX1BP61266 288 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 SIRPAP78324 504 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 CBFBQ13951 182 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 GPAT3Q53EU6 434 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 SLC25A53Q5H9E4 307 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 AP1ARQ63HQ0 302 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 PPP4R4Q6NUP7 873 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 VWA1Q6PCB0 445 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 EIF3MQ7L2H7 374 aaKnown RBP13.55□□□□□ -0.24
TRIM28-205ENST00000595028 TMEM200AQ86VY9 491 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 PNPT1Q8TCS8 783 aaKnown RBP13.55□□□□□ -0.24
TRIM28-205ENST00000595028 ZFP90Q8TF47 636 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 FAM222BQ8WU58 562 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 STARD4Q96DR4 205 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 TRNT1Q96Q11 434 aaKnown RBP13.55□□□□□ -0.24
TRIM28-205ENST00000595028 EBF4Q9BQW3 602 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 RMND5AQ9H871 391 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 MCTS1Q9ULC4 181 aaKnown RBP13.55□□□□□ -0.24
TRIM28-205ENST00000595028 LIPT1Q9Y234 373 aa13.55□□□□□ -0.24
TRIM28-205ENST00000595028 FAM234BA2RU67 622 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 TUBAL3A6NHL2 446 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 A8MXE2 369 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 EFNA2O43921 213 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 CXCL13O43927 109 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 CYP7B1O75881 506 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 OPN1LWP04000 364 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 CHRM4P08173 479 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 UBTFL6P0CB48 400 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-205ENST00000595028 ZCCHC18P0CG32 403 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 SFTPDP35247 375 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 CPOXP36551 454 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 PGM1P36871 562 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 MAGEA8P43361 318 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 KIR2DL2P43627 348 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-205ENST00000595028 SLC6A8P48029 635 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 MVDP53602 400 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 AQP5P55064 265 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 CHRNEQ04844 493 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 SELENBP1Q13228 472 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 QPRTQ15274 297 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 GTDC1Q4AE62 458 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 COX20Q5RI15 118 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 PDSS1Q5T2R2 415 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 HBMQ6B0K9 141 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 LILRA2Q8N149 483 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 ANKFN1Q8N957 763 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 CKAP2Q8WWK9 683 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 ST8SIA1Q92185 356 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 VPS33AQ96AX1 596 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 ZNF524Q96C55 264 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 ITCHQ96J02 903 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 MAGEB18Q96M61 343 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 CCDC28BQ9BUN5 200 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 PRRG4Q9BZD6 226 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 SLC38A1Q9H2H9 487 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 SLC35A3Q9Y2D2 325 aa13.54□□□□□ -0.24
TRIM28-205ENST00000595028 GJE1A6NN92 205 aa13.53□□□□□ -0.24
TRIM28-205ENST00000595028 BCAS1O75363 584 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-205ENST00000595028 SMNDC1O75940 238 aaKnown RBP eCLIP13.53□□□□□ -0.244e-16■□□□□ 8.3
TRIM28-205ENST00000595028 SYNGR4O95473 234 aa13.53□□□□□ -0.24
TRIM28-205ENST00000595028 ANP32DO95626 131 aa13.53□□□□□ -0.24
TRIM28-205ENST00000595028 CD99P14209 185 aa13.53□□□□□ -0.24
TRIM28-205ENST00000595028 PLAURQ03405 335 aa13.53□□□□□ -0.24
TRIM28-205ENST00000595028 SYPL1Q16563 259 aa13.53□□□□□ -0.24
TRIM28-205ENST00000595028 C6orf10Q5SRN2 563 aa13.53□□□□□ -0.24
TRIM28-205ENST00000595028 LRRC74BQ6ZQY2 392 aa13.53□□□□□ -0.24
TRIM28-205ENST00000595028 BTLAQ7Z6A9 289 aa13.53□□□□□ -0.24
TRIM28-205ENST00000595028 HMGN2P46Q86SG4 172 aa13.53□□□□□ -0.24
TRIM28-205ENST00000595028 ZG16BQ96DA0 208 aa13.53□□□□□ -0.24
TRIM28-205ENST00000595028 GMPPAQ96IJ6 420 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-205ENST00000595028 THUMPD3Q9BV44 507 aaKnown RBP13.53□□□□□ -0.24
TRIM28-205ENST00000595028 TMUB1Q9BVT8 246 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 173.2 ms