RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 HS3ST5Q8IZT8 346 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 SHISA5Q8N114 240 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 SLC43A2Q8N370 569 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 CLIP4Q8N3C7 705 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 LSMEM1Q8N8F7 131 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 ZNF441Q8N8Z8 693 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 ZSCAN1Q8NBB4 408 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 NFAM1Q8NET5 270 aaPredicted RBP5.68□□□□□ -1.5
LIG3-206ENST00000586058 OR11G2Q8NGC1 345 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 OR5M3Q8NGP4 307 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 B4GALNT2Q8NHY0 566 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 FAM81AQ8TBF8 368 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 FANK1Q8TC84 345 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 SLC7A13Q8TCU3 470 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 ELP5Q8TE02 316 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 TMEM239Q8WW34 195 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 CNOT9Q92600 299 aaKnown RBP5.68□□□□□ -1.5
LIG3-206ENST00000586058 TFAP2CQ92754 450 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 OSTF1Q92882 214 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 SPACA9Q96E40 222 aaPredicted RBP5.68□□□□□ -1.5
LIG3-206ENST00000586058 SH3YL1Q96HL8 342 aaPredicted RBP5.68□□□□□ -1.5
LIG3-206ENST00000586058 SECISBP2Q96T21 854 aaKnown RBP5.68□□□□□ -1.5
LIG3-206ENST00000586058 REPIN1Q9BWE0 567 aaKnown RBP5.68□□□□□ -1.5
LIG3-206ENST00000586058 YTHDF1Q9BYJ9 559 aaKnown RBP5.68□□□□□ -1.5
LIG3-206ENST00000586058 MRPS26Q9BYN8 205 aaKnown RBP5.68□□□□□ -1.5
LIG3-206ENST00000586058 LAT2Q9GZY6 243 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 C12orf10Q9HB07 376 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 CCNB1IP1Q9NPC3 277 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 P4HTMQ9NXG6 502 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 FBXL4Q9UKA2 621 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 CARD8Q9Y2G2 431 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 TPRKBQ9Y3C4 175 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 PCDHGA6Q9Y5G7 932 aa5.68□□□□□ -1.5
LIG3-206ENST00000586058 SEC16AO15027 2179 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 A0A087WXM4 84 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 A0A0B4J2E0 115 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 CENPVL1A0A0U1RR11 272 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 A0A1B0GWA3 101 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 A0A1B0GX12 115 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 A0A1W2PQ72 361 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 C7orf72A4D263 438 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 UNC119BA6NIH7 251 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 CLDN24A6NM45 220 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 EFCAB9A8MZ26 197 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 TMEM229AB2RXF0 380 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 NPIPB9F8W1W9 429 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 KPNA4O00629 521 aaPredicted RBP5.67□□□□□ -1.5
LIG3-206ENST00000586058 SLC16A6O15403 523 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 WIPF1O43516 503 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 HCN1O60741 890 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 NOL3O60936 208 aaKnown RBP5.67□□□□□ -1.5
LIG3-206ENST00000586058 FAM20BO75063 409 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 DKK1O94907 266 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 RCBTB2O95199 551 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 P04436 131 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 HIST1H2ABP04908 130 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 SERPINA7P05543 415 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 LYNP07948 512 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 FBXO45P0C2W1 286 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 CBLP22681 906 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 TGM1P22735 817 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 FPR3P25089 353 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 LIMS1P48059 325 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 GSSP48637 474 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 SLC9A3P48764 834 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 RNF144AP50876 292 aaPredicted RBP5.67□□□□□ -1.5
LIG3-206ENST00000586058 POLR2HP52434 150 aaKnown RBP5.67□□□□□ -1.5
LIG3-206ENST00000586058 ZNF136P52737 540 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 EFNA3P52797 238 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 CRISP1P54107 249 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 GABARAPL2P60520 117 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 CSNK2BP67870 215 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 ADARB1P78563 741 aaKnown RBP5.67□□□□□ -1.5
LIG3-206ENST00000586058 HOXC5Q00444 222 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 OC90Q02509 493 aaPredicted RBP5.67□□□□□ -1.5
LIG3-206ENST00000586058 NHLH1Q02575 133 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 ZNF117Q03924 483 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 CHAF1BQ13112 559 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 AIMP2Q13155 320 aaKnown RBP5.67□□□□□ -1.5
LIG3-206ENST00000586058 SKP2Q13309 424 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 SNTA1Q13424 505 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 NTRK2Q16620 822 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 KCTD21Q4G0X4 260 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 ZNF691Q5VV52 312 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 SLC30A6Q6NXT4 461 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 C1orf94Q6P1W5 598 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 PGBD2Q6P3X8 592 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 TMEM154Q6P9G4 183 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 TBPL2Q6SJ96 375 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 KLHL17Q6TDP4 642 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 KIRREL2Q6UWL6 708 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 RTL4Q6ZR62 310 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 HIST3H2AQ7L7L0 130 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 ASCL5Q7RTU5 278 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 TMPRSS7Q7RTY8 843 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 TIPARPQ7Z3E1 657 aaKnown RBP5.67□□□□□ -1.5
LIG3-206ENST00000586058 PPP1R32Q7Z5V6 425 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 ZAR1Q86SH2 424 aa5.67□□□□□ -1.5
LIG3-206ENST00000586058 TSPYL5Q86VY4 417 aaPredicted RBP5.67□□□□□ -1.5
LIG3-206ENST00000586058 RPS19BP1Q86WX3 136 aaKnown RBP5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms