RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 LOC390937A0A1W2PQ73 354 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 SMAD9O15198 467 aaKnown RBP11.18□□□□□ -0.62
SS18-219ENST00000581570 RAD51CO43502 376 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 IGHV3-9P01782 118 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 ACP2P11117 423 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 MAGEA12P43365 314 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 P2RX1P51575 399 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 ZNF117Q03924 483 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 HSPB3Q12988 150 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 TOMM34Q15785 309 aaPredicted RBP11.18□□□□□ -0.62
SS18-219ENST00000581570 UNC50Q53HI1 259 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 TEX35Q5T0J7 233 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 FBXW9Q5XUX1 488 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 SLC16A11Q8NCK7 471 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 ZNF540Q8NDQ6 660 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 NUP43Q8NFH3 380 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 FBXO17Q96EF6 278 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 SORCS2Q96PQ0 1159 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 SOX7Q9BT81 388 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 TMEFF2Q9UIK5 374 aaPredicted RBP11.18□□□□□ -0.62
SS18-219ENST00000581570 WBP11Q9Y2W2 641 aaKnown RBP11.18□□□□□ -0.62
SS18-219ENST00000581570 TIMM22Q9Y584 194 aa11.18□□□□□ -0.62
SS18-219ENST00000581570 OIP5O43482 229 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 SBK3P0C264 359 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 PRKCAP17252 672 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 SERPINB4P48594 390 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 PHC1P78364 1004 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 SELENBP1Q13228 472 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 DUSP5Q16690 384 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 SWI5Q1ZZU3 235 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 MST1LQ2TV78 715 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 ZNF678Q5SXM1 525 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 CCNJQ5T5M9 372 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 CBLN3Q6UW01 205 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 LRIG3Q6UXM1 1119 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 SZRD1Q7Z422 152 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 MTERF4Q7Z6M4 381 aaKnown RBP11.17□□□□□ -0.62
SS18-219ENST00000581570 TMEM151AQ8N4L1 468 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 C3orf56Q8N813 242 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 COX18Q8N8Q8 333 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 GPR119Q8TDV5 335 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 MRGPRX4Q96LA9 322 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 BHLHE41Q9C0J9 482 aaPredicted RBP11.17□□□□□ -0.62
SS18-219ENST00000581570 BPESC1Q9GZL8 116 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 MYOZ1Q9NP98 299 aaPredicted RBP11.17□□□□□ -0.62
SS18-219ENST00000581570 ICAM5Q9UMF0 924 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 CARD8Q9Y2G2 431 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 TRAF6Q9Y4K3 522 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 POLR3HQ9Y535 204 aaPredicted RBP11.17□□□□□ -0.62
SS18-219ENST00000581570 ACTL7BQ9Y614 415 aa11.17□□□□□ -0.62
SS18-219ENST00000581570 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 SERTM1A2A2V5 107 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 LRP5LA4QPB2 252 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 CCDC151A5D8V7 595 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 GTPBP1O00178 669 aaKnown RBP11.16□□□□□ -0.62
SS18-219ENST00000581570 PDPK1O15530 556 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 VENTXO95231 258 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 HSPA4LO95757 839 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 ENO1P06733 434 aaKnown RBP11.16□□□□□ -0.62
SS18-219ENST00000581570 ALOX5P09917 674 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 RNF144AP50876 292 aaPredicted RBP11.16□□□□□ -0.62
SS18-219ENST00000581570 SUMO3P55854 103 aaPredicted RBP11.16□□□□□ -0.62
SS18-219ENST00000581570 GABRA6Q16445 453 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 OR7E24Q6IFN5 339 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 ZDHHC24Q6UX98 284 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 WDR31Q8NA23 367 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 ZFAND2BQ8WV99 257 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 APH1AQ96BI3 265 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 ARL8AQ96BM9 186 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 GIMAP5Q96F15 307 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 OTUB1Q96FW1 271 aaPredicted RBP11.16□□□□□ -0.62
SS18-219ENST00000581570 C16orf58Q96GQ5 468 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 MUS81Q96NY9 551 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 OR5B2Q96R09 309 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 KCNA7Q96RP8 456 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 VRK1Q99986 396 aaPredicted RBP11.16□□□□□ -0.62
SS18-219ENST00000581570 IQCGQ9H095 443 aaKnown RBP11.16□□□□□ -0.62
SS18-219ENST00000581570 ASB6Q9NWX5 421 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 TAS2R16Q9NYV7 291 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 EMC3Q9P0I2 261 aa11.16□□□□□ -0.62
SS18-219ENST00000581570 NOSIPQ9Y314 301 aaKnown RBP11.16□□□□□ -0.62
SS18-219ENST00000581570 UTP11Q9Y3A2 253 aaKnown RBP11.16□□□□□ -0.62
SS18-219ENST00000581570 A0A0A6YYJ9 748 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 NPIPA5A0A0B4J1W7 369 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 NPIPA7E9PJI5 369 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 SLCO1B7G3V0H7 640 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 H3BNH8 94 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 INHBAP08476 426 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 NPIPA8P0DM63 369 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 TAC1P20366 129 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 PHBP35232 272 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 FOXG1P55316 489 aaPredicted RBP11.15□□□□□ -0.62
SS18-219ENST00000581570 PKNOX1P55347 436 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 GNG11P61952 73 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 SNRPD2P62316 118 aaKnown RBP11.15□□□□□ -0.62
SS18-219ENST00000581570 ACTG1P63261 375 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 POU6F2P78424 691 aaPredicted RBP11.15□□□□□ -0.62
SS18-219ENST00000581570 MLC1Q15049 377 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 IMPG1Q17R60 797 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 SLC25A53Q5H9E4 307 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms