RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 CLNS1AP54105 237 aaKnown RBP12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 ABCE1P61221 599 aaKnown RBP12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 FOXF1Q12946 379 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 TMEM201Q5SNT2 666 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 C3orf33Q6P1S2 294 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 C6orf120Q7Z4R8 191 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 GATSQ8NAP1 163 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 WFDC11Q8NEX6 87 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 FBXO27Q8NI29 283 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 PPP1R14CQ8TAE6 165 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 FBXO30Q8TB52 745 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 AGR3Q8TD06 166 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 ZFP90Q8TF47 636 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 TMEM234Q8WY98 164 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 SH3YL1Q96HL8 342 aaPredicted RBP12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 NPAS1Q99742 590 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 C1orf50Q9BV19 199 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 AKTIPQ9H8T0 292 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 NGBQ9NPG2 151 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 ZNF701Q9NV72 531 aaPredicted RBP12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 KLHL9Q9P2J3 617 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 GIMAP2Q9UG22 337 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 RAB21Q9UL25 225 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 SLC35A3Q9Y2D2 325 aa12.93□□□□□ -0.34
SMARCE1-216ENST00000580419 ZNF724A8MTY0 619 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 RGS16O15492 202 aaPredicted RBP12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 CFLARO15519 480 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 SKAP2O75563 359 aaPredicted RBP12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 GCM2O75603 506 aaPredicted RBP12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 HOXB4P17483 251 aaPredicted RBP12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 MATN1P21941 496 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 UQCRC2P22695 453 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 CLK1P49759 484 aaKnown RBP12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 MAP2K6P52564 334 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 SLC18A1P54219 525 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 ZNF844Q08AG5 666 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 SKP2Q13309 424 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 CASP8Q14790 479 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 PDK3Q15120 406 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 POU4F3Q15319 338 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 KRT71Q3SY84 523 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 TFAP2EQ6VUC0 442 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 ZNF611Q8N823 705 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 PIK3IP1Q96FE7 263 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 KLHL4Q9C0H6 718 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 COQ10BQ9H8M1 238 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 MEAF6Q9HAF1 191 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 EXOSC3Q9NQT5 275 aaKnown RBP12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 CARD8Q9Y2G2 431 aa12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 FN1P02751 2386 aaKnown RBP12.92□□□□□ -0.34
SMARCE1-216ENST00000580419 UQCRHLA0A096LP55 91 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 KIAA0513O60268 411 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 NUDT14O95848 222 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 INHBBP09529 407 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 PGCP20142 388 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 EFNA1P20827 205 aaPredicted RBP12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 ATAD3BQ5T9A4 648 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 SAXO2Q658L1 398 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 C22orf34Q6ZV56 151 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 PLEKHM3Q6ZWE6 761 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 EIF3MQ7L2H7 374 aaKnown RBP12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 FCRLAQ7L513 359 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 P2RY8Q86VZ1 359 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 P3H2Q8IVL5 708 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 CMIPQ8IY22 773 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 ZNF781Q8N8C0 355 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 HSD17B8Q92506 261 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 NEURL3Q96EH8 262 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 CHMP6Q96FZ7 201 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 COX4I2Q96KJ9 171 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 SORT1Q99523 831 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 CCL19Q99731 98 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 KLHDC3Q9BQ90 382 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 BDH2Q9BUT1 245 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 DPY30Q9C005 99 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 ACTR6Q9GZN1 396 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 SERHL2Q9H4I8 314 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 SERINC1Q9NRX5 453 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 ACER3Q9NUN7 267 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 BTNL2Q9UIR0 455 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 KCNE3Q9Y6H6 103 aa12.91□□□□□ -0.34
SMARCE1-216ENST00000580419 IGKV3D-15A0A087WSY6 115 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 RNF103-CHMP3A0A140T963 221 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 ITM2AO43736 263 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 GMFGO60234 142 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 ZNF500O60304 480 aaPredicted RBP12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 CYTIPO60759 359 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 UGT2B17O75795 530 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 LBPP18428 481 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 SLC7A1P30825 629 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 APOBEC1P41238 236 aaKnown RBP12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 SLC1A6P48664 564 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 CSNK2A1P68400 391 aaPredicted RBP12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 ITGADQ13349 1161 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 QPRTQ15274 297 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 CHI3L2Q15782 390 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 ETFDHQ16134 617 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 TMEM176BQ3YBM2 270 aaPredicted RBP12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 PDZK1Q5T2W1 519 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms