RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 SLC6A13Q9NSD5 602 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 GALNT8Q9NY28 637 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 MCTS1Q9ULC4 181 aaKnown RBP21.45■■□□□ 1.02
SHMT1-206ENST00000579558 LIPT1Q9Y234 373 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 TUBAL3A6NHL2 446 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 MSTNO14793 375 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 SYNGR4O95473 234 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 KIR2DL2P43627 348 aaPredicted RBP21.44■■□□□ 1.02
SHMT1-206ENST00000579558 SLC6A8P48029 635 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 AQP5P55064 265 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 CHRNEQ04844 493 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 SYPL1Q16563 259 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 HMGN2P46Q86SG4 172 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 ANKFN1Q8N957 763 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 ZFP90Q8TF47 636 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 FAM222BQ8WU58 562 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 CKAP2Q8WWK9 683 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 VPS33AQ96AX1 596 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 MRGPRX4Q96LA9 322 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 TRNT1Q96Q11 434 aaKnown RBP21.44■■□□□ 1.02
SHMT1-206ENST00000579558 CCDC28BQ9BUN5 200 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 THUMPD3Q9BV44 507 aaKnown RBP21.44■■□□□ 1.02
SHMT1-206ENST00000579558 SLC35A3Q9Y2D2 325 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 HEATR5AQ86XA9 2040 aa21.44■■□□□ 1.02
SHMT1-206ENST00000579558 ANKHD1Q8IWZ3 2542 aaKnown RBP21.44■■□□□ 1.02
SHMT1-206ENST00000579558 A8MXE2 369 aa21.43■■□□□ 1.02
SHMT1-206ENST00000579558 EFNA2O43921 213 aa21.43■■□□□ 1.02
SHMT1-206ENST00000579558 ZCCHC18P0CG32 403 aa21.43■■□□□ 1.02
SHMT1-206ENST00000579558 SHC1P29353 583 aa21.43■■□□□ 1.02
SHMT1-206ENST00000579558 CPOXP36551 454 aa21.43■■□□□ 1.02
SHMT1-206ENST00000579558 MRPL19P49406 292 aaKnown RBP21.43■■□□□ 1.02
SHMT1-206ENST00000579558 SLC25A53Q5H9E4 307 aa21.43■■□□□ 1.02
SHMT1-206ENST00000579558 C6orf10Q5SRN2 563 aa21.43■■□□□ 1.02
SHMT1-206ENST00000579558 AP1ARQ63HQ0 302 aa21.43■■□□□ 1.02
SHMT1-206ENST00000579558 BTLAQ7Z6A9 289 aa21.43■■□□□ 1.02
SHMT1-206ENST00000579558 ATP6V1C2Q8NEY4 427 aa21.43■■□□□ 1.02
SHMT1-206ENST00000579558 ZNF524Q96C55 264 aa21.43■■□□□ 1.02
SHMT1-206ENST00000579558 ZG16BQ96DA0 208 aa21.43■■□□□ 1.02
SHMT1-206ENST00000579558 MAGEB18Q96M61 343 aa21.43■■□□□ 1.02
SHMT1-206ENST00000579558 QRSL1Q9H0R6 528 aaKnown RBP21.43■■□□□ 1.02
SHMT1-206ENST00000579558 GJE1A6NN92 205 aa21.42■■□□□ 1.02
SHMT1-206ENST00000579558 PDZD2O15018 2839 aa21.42■■□□□ 1.02
SHMT1-206ENST00000579558 NTN1O95631 604 aa21.42■■□□□ 1.02
SHMT1-206ENST00000579558 CHRM4P08173 479 aa21.42■■□□□ 1.02
SHMT1-206ENST00000579558 NR2F1P10589 423 aa21.42■■□□□ 1.02
SHMT1-206ENST00000579558 PGM1P36871 562 aa21.42■■□□□ 1.02
SHMT1-206ENST00000579558 MAGEA8P43361 318 aa21.42■■□□□ 1.02
SHMT1-206ENST00000579558 CARD18P57730 90 aa21.42■■□□□ 1.02
SHMT1-206ENST00000579558 SELENBP1Q13228 472 aa21.42■■□□□ 1.02
SHMT1-206ENST00000579558 GTDC1Q4AE62 458 aa21.42■■□□□ 1.02
SHMT1-206ENST00000579558 LINC01560Q8TB33 94 aa21.42■■□□□ 1.02
SHMT1-206ENST00000579558 OSTF1Q92882 214 aa21.42■■□□□ 1.02
SHMT1-206ENST00000579558 SLC38A1Q9H2H9 487 aa21.42■■□□□ 1.02
SHMT1-206ENST00000579558 ST6GALNAC1Q9NSC7 600 aaPredicted RBP21.42■■□□□ 1.02
SHMT1-206ENST00000579558 TACC2O95359 2948 aa21.41■■□□□ 1.02
SHMT1-206ENST00000579558 ENO4A6NNW6 628 aa21.41■■□□□ 1.02
SHMT1-206ENST00000579558 DNAJA2O60884 412 aa21.41■■□□□ 1.02
SHMT1-206ENST00000579558 PLGP00747 810 aaPredicted RBP21.41■■□□□ 1.02
SHMT1-206ENST00000579558 PGCP20142 388 aa21.41■■□□□ 1.02
SHMT1-206ENST00000579558 GUSBP1Q15486 140 aa21.41■■□□□ 1.02
SHMT1-206ENST00000579558 TMEM176BQ3YBM2 270 aaPredicted RBP21.41■■□□□ 1.02
SHMT1-206ENST00000579558 LRRC74BQ6ZQY2 392 aa21.41■■□□□ 1.02
SHMT1-206ENST00000579558 FAM214BQ7L5A3 538 aa21.41■■□□□ 1.02
SHMT1-206ENST00000579558 FAM71CQ8NEG0 241 aa21.41■■□□□ 1.02
SHMT1-206ENST00000579558 ST8SIA1Q92185 356 aa21.41■■□□□ 1.02
SHMT1-206ENST00000579558 OPN3Q9H1Y3 402 aaPredicted RBP21.41■■□□□ 1.02
SHMT1-206ENST00000579558 TPT1P8Q9HAU6 139 aa21.41■■□□□ 1.02
SHMT1-206ENST00000579558 CLEC4AQ9UMR7 237 aa21.41■■□□□ 1.02
SHMT1-206ENST00000579558 UQCRHLA0A096LP55 91 aa21.4■■□□□ 1.02
SHMT1-206ENST00000579558 ETV2O00321 342 aaPredicted RBP21.4■■□□□ 1.02
SHMT1-206ENST00000579558 BCAS1O75363 584 aaPredicted RBP21.4■■□□□ 1.02
SHMT1-206ENST00000579558 CTAG2O75638 210 aa21.4■■□□□ 1.02
SHMT1-206ENST00000579558 ETFAP13804 333 aa21.4■■□□□ 1.02
SHMT1-206ENST00000579558 CRATP43155 626 aa21.4■■□□□ 1.02
SHMT1-206ENST00000579558 MVDP53602 400 aa21.4■■□□□ 1.02
SHMT1-206ENST00000579558 SESN3P58005 492 aa21.4■■□□□ 1.02
SHMT1-206ENST00000579558 KCNJ10P78508 379 aa21.4■■□□□ 1.02
SHMT1-206ENST00000579558 SLC2A7Q6PXP3 512 aa21.4■■□□□ 1.02
SHMT1-206ENST00000579558 CDH24Q86UP0 819 aa21.4■■□□□ 1.02
SHMT1-206ENST00000579558 TMEM234Q8WY98 164 aa21.4■■□□□ 1.02
SHMT1-206ENST00000579558 GTF2H4Q92759 462 aa21.4■■□□□ 1.02
SHMT1-206ENST00000579558 AURKBQ96GD4 344 aaPredicted RBP21.4■■□□□ 1.02
SHMT1-206ENST00000579558 GMPPAQ96IJ6 420 aaPredicted RBP21.4■■□□□ 1.02
SHMT1-206ENST00000579558 GPATCH1Q9BRR8 931 aaKnown RBP21.4■■□□□ 1.02
SHMT1-206ENST00000579558 TIGARQ9NQ88 270 aa21.4■■□□□ 1.02
SHMT1-206ENST00000579558 P2RX2Q9UBL9 471 aa21.4■■□□□ 1.02
SHMT1-206ENST00000579558 PROCRQ9UNN8 238 aa21.4■■□□□ 1.02
SHMT1-206ENST00000579558 EMC9Q9Y3B6 208 aa21.4■■□□□ 1.02
SHMT1-206ENST00000579558 AGAP5A6NIR3 686 aa21.39■■□□□ 1.01
SHMT1-206ENST00000579558 CLDN24A6NM45 220 aa21.39■■□□□ 1.01
SHMT1-206ENST00000579558 A6NNC1 897 aa21.39■■□□□ 1.01
SHMT1-206ENST00000579558 CGAP01215 116 aa21.39■■□□□ 1.01
SHMT1-206ENST00000579558 CD8BP10966 210 aa21.39■■□□□ 1.01
SHMT1-206ENST00000579558 EPXP11678 715 aa21.39■■□□□ 1.01
SHMT1-206ENST00000579558 CTBP2P56545 445 aa21.39■■□□□ 1.01
SHMT1-206ENST00000579558 ARFGAP2Q8N6H7 521 aa21.39■■□□□ 1.01
SHMT1-206ENST00000579558 ZNF563Q8TA94 476 aa21.39■■□□□ 1.01
SHMT1-206ENST00000579558 CPNE4Q96A23 557 aaPredicted RBP21.39■■□□□ 1.01
SHMT1-206ENST00000579558 THOC1Q96FV9 657 aaKnown RBP21.39■■□□□ 1.01
SHMT1-206ENST00000579558 REXO5Q96IC2 774 aaKnown RBP21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms