RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 A6NL46 340 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 AK1P00568 194 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 SLC2A5P22732 501 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 PBX2P40425 430 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 SRP54P61011 504 aaKnown RBP21.07■□□□□ 0.96
VPS53-211ENST00000571805 POU6F2P78424 691 aaPredicted RBP21.07■□□□□ 0.96
VPS53-211ENST00000571805 SF3A2Q15428 464 aaKnown RBP21.07■□□□□ 0.96
VPS53-211ENST00000571805 ALG11Q2TAA5 492 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 HBMQ6B0K9 141 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 FCRLBQ6BAA4 426 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 ZNF613Q6PF04 617 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 PLSCR3Q9NRY6 295 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 PAQR5Q9NXK6 330 aaPredicted RBP21.07■□□□□ 0.96
VPS53-211ENST00000571805 NLKQ9UBE8 527 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 ZMIZ1Q9ULJ6 1067 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 CLCA3PQ9Y6N3 262 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 SPACA6W5XKT8 324 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 TRAV27A0A087WT01 109 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 FAM25AB3EWG3 89 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 FAM25CB3EWG5 89 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 FAM25GB3EWG6 89 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 PLPP2O43688 288 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 SAGP10523 405 aaPredicted RBP21.07■□□□□ 0.96
VPS53-211ENST00000571805 EN2P19622 333 aaPredicted RBP21.07■□□□□ 0.96
VPS53-211ENST00000571805 THBS2P35442 1172 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 CD83Q01151 205 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 PAMR1Q6UXH9 720 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 CA13Q8N1Q1 262 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 PATE1Q8WXA2 126 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 ZNF559Q9BR84 538 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 PBX4Q9BYU1 374 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 OR51V1Q9H2C8 321 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 EXTL2Q9UBQ6 330 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 SLC35A3Q9Y2D2 325 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 ALG5Q9Y673 324 aa21.07■□□□□ 0.96
VPS53-211ENST00000571805 GALR3O60755 368 aaPredicted RBP21.06■□□□□ 0.96
VPS53-211ENST00000571805 MT-ND5P03915 603 aa21.06■□□□□ 0.96
VPS53-211ENST00000571805 SBK2P0C263 348 aa21.06■□□□□ 0.96
VPS53-211ENST00000571805 CD53P19397 219 aa21.06■□□□□ 0.96
VPS53-211ENST00000571805 F8A1P23610 371 aa21.06■□□□□ 0.96
VPS53-211ENST00000571805 CLDN20P56880 219 aa21.06■□□□□ 0.96
VPS53-211ENST00000571805 E2F1Q01094 437 aa21.06■□□□□ 0.96
VPS53-211ENST00000571805 ADAM15Q13444 863 aa21.06■□□□□ 0.96
VPS53-211ENST00000571805 OR51A7Q8NH64 312 aa21.06■□□□□ 0.96
VPS53-211ENST00000571805 CNOT9Q92600 299 aaKnown RBP21.06■□□□□ 0.96
VPS53-211ENST00000571805 ANKRD9Q96BM1 317 aaPredicted RBP21.06■□□□□ 0.96
VPS53-211ENST00000571805 UPRTQ96BW1 309 aa21.06■□□□□ 0.96
VPS53-211ENST00000571805 TMEM246Q9BRR3 403 aa21.06■□□□□ 0.96
VPS53-211ENST00000571805 ADGRL4Q9HBW9 690 aa21.06■□□□□ 0.96
VPS53-211ENST00000571805 CYSLTR2Q9NS75 346 aa21.06■□□□□ 0.96
VPS53-211ENST00000571805 FLRT3Q9NZU0 649 aa21.06■□□□□ 0.96
VPS53-211ENST00000571805 A0A0G2JMP0 313 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 A0A0X1KG70 313 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 FAM240BA0A1B0GVZ2 78 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 MRPL3P09001 348 aaKnown RBP21.05■□□□□ 0.96
VPS53-211ENST00000571805 IFI6P09912 130 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 CLUP10909 449 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 HNRNPA2B1P22626 353 aaKnown RBP21.05■□□□□ 0.96
VPS53-211ENST00000571805 RPS7P62081 194 aaKnown RBP21.05■□□□□ 0.96
VPS53-211ENST00000571805 ZNF85Q03923 595 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 CSTF1Q05048 431 aaKnown RBP21.05■□□□□ 0.96
VPS53-211ENST00000571805 FAM27D1Q5T7N8 215 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 ARL9Q6T311 187 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 TMEM184AQ6ZMB5 413 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 DGAT2L6Q6ZPD8 337 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 RNF44Q7L0R7 432 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 OR4M2Q8NGB6 313 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 OR5M3Q8NGP4 307 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 MARVELD1Q9BSK0 173 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 LMAN2LQ9H0V9 348 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 TMEM27Q9HBJ8 222 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 A0A0B4J2E0 115 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 A0A1B0GX12 115 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 EPOPA6NHQ4 379 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 NKX2-2O95096 273 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 YES1P07947 543 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 FHL1Q13642 323 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 GRHL3Q8TE85 626 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 HOXB13Q92826 284 aaPredicted RBP21.05■□□□□ 0.96
VPS53-211ENST00000571805 MRGPRX1Q96LB2 322 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 NDC1Q9BTX1 674 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 POLE3Q9NRF9 147 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 C14orf105Q9NVL8 296 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 FBXL4Q9UKA2 621 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 FBXL21Q9UKT6 434 aa21.05■□□□□ 0.96
VPS53-211ENST00000571805 ADAM11O75078 769 aa21.04■□□□□ 0.96
VPS53-211ENST00000571805 CBX7O95931 251 aa21.04■□□□□ 0.96
VPS53-211ENST00000571805 SLC16A1P53985 500 aa21.04■□□□□ 0.96
VPS53-211ENST00000571805 TFF2Q03403 129 aa21.04■□□□□ 0.96
VPS53-211ENST00000571805 CRMP1Q14194 572 aa21.04■□□□□ 0.96
VPS53-211ENST00000571805 TCTE3Q8IZS6 198 aa21.04■□□□□ 0.96
VPS53-211ENST00000571805 LILRB4Q8NHJ6 448 aa21.04■□□□□ 0.96
VPS53-211ENST00000571805 SMAP2Q8WU79 429 aaPredicted RBP21.04■□□□□ 0.96
VPS53-211ENST00000571805 USP36Q9P275 1121 aaKnown RBP21.04■□□□□ 0.96
VPS53-211ENST00000571805 LRP4O75096 1905 aa21.04■□□□□ 0.96
VPS53-211ENST00000571805 C2orf74A8MZ97 194 aa21.04■□□□□ 0.96
VPS53-211ENST00000571805 Q5BKY6 102 aa21.04■□□□□ 0.96
VPS53-211ENST00000571805 TMEM31Q5JXX7 168 aa21.04■□□□□ 0.96
VPS53-211ENST00000571805 MANEAQ5SRI9 462 aa21.04■□□□□ 0.96
VPS53-211ENST00000571805 ZNF438Q7Z4V0 828 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms