RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-208ENST00000570874 SLC28A1O00337 649 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 SOX1O00570 391 aaPredicted RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 PPP6CO00743 305 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 GAPDHSO14556 408 aaPredicted RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 PLIN3O60664 434 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 FCGR3BO75015 233 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 BCAS1O75363 584 aaPredicted RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 CCNKO75909 580 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 WISP3O95389 354 aaPredicted RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 LATS1O95835 1130 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 FADS2O95864 444 aaKnown RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 ADAP00813 363 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 CST4P01036 141 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 CYBBP04839 570 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 RPN2P04844 631 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 IFNA16P05015 189 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 FGF1P05230 155 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 C2P06681 752 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 BPGMP07738 259 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 SYPP08247 313 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 HBQ1P09105 142 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 SMIM10L1P0DMW3 83 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 SAGP10523 405 aaPredicted RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 ITGAMP11215 1152 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 FCGR1AP12314 374 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 XRCC1P18887 633 aaPredicted RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 HK1P19367 917 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 UGT1A4P22310 534 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 DNASE1P24855 282 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 CRHR1P34998 444 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 PTGER4P35408 488 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 UGT1A3P35503 534 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 UGT1A5P35504 534 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 GPR12P47775 334 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 NPBWR1P48145 328 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 MMP15P51511 669 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 ZNF140P52738 457 aaPredicted RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 CDKN2DP55273 166 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 PKNOX1P55347 436 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 TAS2R39P59534 338 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 CTXN1P60606 82 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 RHOAP61586 193 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 ADARB1P78563 741 aaKnown RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 RELBQ01201 579 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 MEF2AQ02078 507 aaPredicted RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 PAX5Q02548 391 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 IRF8Q02556 426 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 FOLH1Q04609 750 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 SLC34A1Q06495 639 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 DLX2Q07687 328 aaPredicted RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 RBBP4Q09028 425 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 ILF3Q12906 894 aaKnown RBP eCLIP3.29□□□□□ -1.883e-6■■■□□ 18.5
SMG6-208ENST00000570874 TNK1Q13470 666 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 MED21Q13503 144 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 ITGA9Q13797 1035 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 ADGRE1Q14246 886 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 SLBPQ14493 270 aaKnown RBP eCLIP3.29□□□□□ -1.88
SMG6-208ENST00000570874 TAF13Q15543 124 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 CCDC6Q16204 474 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 EXT1Q16394 746 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 KCNMB1Q16558 191 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 IMPG1Q17R60 797 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 ZNF750Q32MQ0 723 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 TRMT5Q32P41 509 aaKnown RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 ADPRMQ3LIE5 342 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 ACCSLQ4AC99 568 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 HECTD2Q5U5R9 776 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 MBLAC2Q68D91 279 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 TMEM225Q6GV28 225 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 TCEAL6Q6IPX3 200 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 LRRC8EQ6NSJ5 796 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 RHBDD2Q6NTF9 364 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 H3F3CQ6NXT2 135 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 C22orf39Q6P5X5 142 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 VWA1Q6PCB0 445 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 DOK6Q6PKX4 331 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 CBLN3Q6UW01 205 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 LYPD4Q6UWN0 246 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 NAPRTQ6XQN6 538 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 Q6ZVU0 165 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 CYS1Q717R9 158 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 RPS27LQ71UM5 84 aaKnown RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 CXXC5Q7LFL8 322 aaKnown RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 DPPA2Q7Z7J5 298 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 CLEC14AQ86T13 490 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 PATL1Q86TB9 770 aaKnown RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 TSPAN33Q86UF1 283 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 ADIPOR2Q86V24 386 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 TGIF2LXQ8IUE1 241 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 C10orf107Q8IVU9 208 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 DCUN1D3Q8IWE4 304 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 GPALPP1Q8IXQ4 340 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 ZNF100Q8IYN0 542 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 ADGRF3Q8IZF5 1079 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 RYBPQ8N488 228 aaPredicted RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 AMER3Q8N944 861 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 DCAF4L2Q8NA75 395 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 FAM83FQ8NEG4 500 aaPredicted RBP3.29□□□□□ -1.88
SMG6-208ENST00000570874 NUP43Q8NFH3 380 aa3.29□□□□□ -1.88
SMG6-208ENST00000570874 OR4K2Q8NGD2 314 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms