RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 QPRTQ15274 297 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 ZNF474Q6S9Z5 364 aaPredicted RBP18.18■□□□□ 0.5
CLK3-225ENST00000569063 FRRS1Q6ZNA5 592 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 HDXQ7Z353 690 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 ZNF619Q8N2I2 560 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 TMCO5AQ8N6Q1 288 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 RFWD2Q8NHY2 731 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 LRRC8CQ8TDW0 803 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 MARK4Q96L34 752 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 TRNT1Q96Q11 434 aaKnown RBP18.18■□□□□ 0.5
CLK3-225ENST00000569063 THUMPD3Q9BV44 507 aaKnown RBP18.18■□□□□ 0.5
CLK3-225ENST00000569063 OPN3Q9H1Y3 402 aaPredicted RBP18.18■□□□□ 0.5
CLK3-225ENST00000569063 GLRX2Q9NS18 164 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 ELOVL5Q9NYP7 299 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 ITGB1BP2Q9UKP3 347 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 LIPT1Q9Y234 373 aa18.18■□□□□ 0.5
CLK3-225ENST00000569063 SH3D21A4FU49 640 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 RFXANKO14593 260 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 SS18L1O75177 396 aaPredicted RBP18.17■□□□□ 0.5
CLK3-225ENST00000569063 TGDSO95455 350 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 GSNP06396 782 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 NID1P14543 1247 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 SFTPDP35247 375 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 PGM1P36871 562 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 CD79BP40259 229 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 MAGEA8P43361 318 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 ANXA11P50995 505 aaKnown RBP18.17■□□□□ 0.5
CLK3-225ENST00000569063 FAM27E3Q08E93 113 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 TESK1Q15569 626 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 GPAT3Q53EU6 434 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 PPP4R4Q6NUP7 873 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 MSANTD1Q6ZTZ1 278 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 ZNF610Q8N9Z0 462 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 FAM71CQ8NEG0 241 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 ZG16BQ96DA0 208 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 SLC39A3Q9BRY0 314 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 VIPAS39Q9H9C1 493 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 TIGARQ9NQ88 270 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 PLSCR4Q9NRQ2 329 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 NDRG3Q9UGV2 375 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 SLC35A3Q9Y2D2 325 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 EMC9Q9Y3B6 208 aa18.17■□□□□ 0.5
CLK3-225ENST00000569063 H6PDO95479 791 aa18.16■□□□□ 0.5
CLK3-225ENST00000569063 PLGP00747 810 aaPredicted RBP18.16■□□□□ 0.5
CLK3-225ENST00000569063 UBTFL6P0CB48 400 aaPredicted RBP18.16■□□□□ 0.5
CLK3-225ENST00000569063 ZCCHC18P0CG32 403 aa18.16■□□□□ 0.5
CLK3-225ENST00000569063 DNAJA1P31689 397 aaKnown RBP18.16■□□□□ 0.5
CLK3-225ENST00000569063 CCR4P51679 360 aa18.16■□□□□ 0.5
CLK3-225ENST00000569063 HPCAP84074 193 aa18.16■□□□□ 0.5
CLK3-225ENST00000569063 CHRNEQ04844 493 aa18.16■□□□□ 0.5
CLK3-225ENST00000569063 SELENBP1Q13228 472 aa18.16■□□□□ 0.5
CLK3-225ENST00000569063 TMEM176BQ3YBM2 270 aaPredicted RBP18.16■□□□□ 0.5
CLK3-225ENST00000569063 GTF2IRD2BQ6EKJ0 949 aa18.16■□□□□ 0.5
CLK3-225ENST00000569063 GTF2IRD2Q86UP8 949 aa18.16■□□□□ 0.5
CLK3-225ENST00000569063 CDC20BQ86Y33 519 aa18.16■□□□□ 0.5
CLK3-225ENST00000569063 MIER2Q8N344 545 aa18.16■□□□□ 0.5
CLK3-225ENST00000569063 OR6K3Q8NGY3 331 aa18.16■□□□□ 0.5
CLK3-225ENST00000569063 ST8SIA1Q92185 356 aa18.16■□□□□ 0.5
CLK3-225ENST00000569063 NRGNQ92686 78 aa18.16■□□□□ 0.5
CLK3-225ENST00000569063 CPNE4Q96A23 557 aaPredicted RBP18.16■□□□□ 0.5
CLK3-225ENST00000569063 SLCO1B3Q9NPD5 702 aa18.16■□□□□ 0.5
CLK3-225ENST00000569063 ARGLU1Q9NWB6 273 aaPredicted RBP18.16■□□□□ 0.5
CLK3-225ENST00000569063 PROCRQ9UNN8 238 aa18.16■□□□□ 0.5
CLK3-225ENST00000569063 HMGB1P1B2RPK0 211 aaPredicted RBP18.15■□□□□ 0.5
CLK3-225ENST00000569063 CYP7B1O75881 506 aa18.15■□□□□ 0.5
CLK3-225ENST00000569063 KRT75O95678 551 aa18.15■□□□□ 0.5
CLK3-225ENST00000569063 H2AFXP16104 143 aaPredicted RBP18.15■□□□□ 0.5
CLK3-225ENST00000569063 PGCP20142 388 aa18.15■□□□□ 0.5
CLK3-225ENST00000569063 MRPL19P49406 292 aaKnown RBP18.15■□□□□ 0.5
CLK3-225ENST00000569063 POLR2JP52435 117 aaKnown RBP18.15■□□□□ 0.5
CLK3-225ENST00000569063 KCNJ10P78508 379 aa18.15■□□□□ 0.5
CLK3-225ENST00000569063 SYPL1Q16563 259 aa18.15■□□□□ 0.5
CLK3-225ENST00000569063 ZNF239Q16600 458 aaKnown RBP18.15■□□□□ 0.5
CLK3-225ENST00000569063 COX20Q5RI15 118 aa18.15■□□□□ 0.5
CLK3-225ENST00000569063 ANKFN1Q8N957 763 aa18.15■□□□□ 0.5
CLK3-225ENST00000569063 ZFP90Q8TF47 636 aa18.15■□□□□ 0.5
CLK3-225ENST00000569063 TMEM234Q8WY98 164 aa18.15■□□□□ 0.5
CLK3-225ENST00000569063 PMM1Q92871 262 aa18.15■□□□□ 0.5
CLK3-225ENST00000569063 SLC38A1Q9H2H9 487 aa18.15■□□□□ 0.5
CLK3-225ENST00000569063 RMND5AQ9H871 391 aa18.15■□□□□ 0.5
CLK3-225ENST00000569063 ST6GALNAC1Q9NSC7 600 aaPredicted RBP18.15■□□□□ 0.5
CLK3-225ENST00000569063 SLC6A13Q9NSD5 602 aa18.15■□□□□ 0.5
CLK3-225ENST00000569063 TESMINQ9Y4I5 508 aa18.15■□□□□ 0.5
CLK3-225ENST00000569063 ANKHD1Q8IWZ3 2542 aaKnown RBP18.15■□□□□ 0.5
CLK3-225ENST00000569063 POLQO75417 2590 aa18.14■□□□□ 0.49
CLK3-225ENST00000569063 FAM234BA2RU67 622 aa18.14■□□□□ 0.49
CLK3-225ENST00000569063 CHRM4P08173 479 aa18.14■□□□□ 0.49
CLK3-225ENST00000569063 PABPC4LP0CB38 370 aaKnown RBP18.14■□□□□ 0.49
CLK3-225ENST00000569063 POU2F1P14859 743 aa18.14■□□□□ 0.49
CLK3-225ENST00000569063 UGT2B10P36537 528 aa18.14■□□□□ 0.49
CLK3-225ENST00000569063 MVDP53602 400 aa18.14■□□□□ 0.49
CLK3-225ENST00000569063 CTBP2P56545 445 aa18.14■□□□□ 0.49
CLK3-225ENST00000569063 SESN3P58005 492 aa18.14■□□□□ 0.49
CLK3-225ENST00000569063 TIGD2Q4W5G0 525 aa18.14■□□□□ 0.49
CLK3-225ENST00000569063 LRRC74BQ6ZQY2 392 aa18.14■□□□□ 0.49
CLK3-225ENST00000569063 GOLGA6L1Q8N7Z2 621 aa18.14■□□□□ 0.49
CLK3-225ENST00000569063 OR9I1Q8NGQ6 314 aa18.14■□□□□ 0.49
CLK3-225ENST00000569063 PNPT1Q8TCS8 783 aaKnown RBP18.14■□□□□ 0.49
CLK3-225ENST00000569063 RNF128Q8TEB7 428 aa18.14■□□□□ 0.49
CLK3-225ENST00000569063 NINJ1Q92982 152 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms